-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1604

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 585, 758
Couldn't classify 2012, 2094
Sorry, prediction Augustus_model.g40576.t1 fails validation.
(GTA)	 AG	585-758	GT	AGG
(GAT)	 AG	1273-1369	GT	AGG
(GGT)	 AG	1848-1920	GT	CAG
(CTT)	 AG	2012-2094	GT	AGG
-recovered Augustus_model.g40576.t1, internal, 585, 758
-recovered Augustus_model.g40576.t1, internal, 1273, 1369
-recovered Augustus_model.g40576.t1, internal, 1848, 1920
-recovered Augustus_model.g40576.t1, internal, 2012, 2094
Couldn't classify 585, 758
Couldn't classify 2012, 2094
Sorry, prediction snap_scaffold_1604-snap.1-T1 fails validation.
(GTA)	 AG	585-758	GT	AGG
(GAT)	 AG	1273-1369	GT	AGG
(GGT)	 AG	1848-1920	GT	CAG
(CTT)	 AG	2012-2094	GT	AGG
-recovered snap_scaffold_1604-snap.1-T1, internal, 585, 758
-recovered snap_scaffold_1604-snap.1-T1, internal, 1273, 1369
-recovered snap_scaffold_1604-snap.1-T1, internal, 1848, 1920
-recovered snap_scaffold_1604-snap.1-T1, internal, 2012, 2094
Valid prediction for GlimmerHMM_glimmerT_61236-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61236-T1 585-774-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2158
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support