-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_160

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 11596, 11755
Sorry, prediction Augustus_model.g39691.t1 fails validation.
(ATG)	 GC	6547-6550	GT	GTG
(GAG)	 AG	7689-7955	GT	GGG
(ATG)	 AG	8551-8642	GT	CTG
(GTC)	 AG	8778-9113	GT	AGG
(GTG)	 AG	11015-11106	GT	AGG
(GTG)	 AG	11315-11504	GT	AGG
(GGG)	 AG	11596-11755	GT	CGG
-recovered Augustus_model.g39691.t1, initial, 6547, 6550
-recovered Augustus_model.g39691.t1, initial, 8551, 8642
-recovered Augustus_model.g39691.t1, internal, 7689, 7955
-recovered Augustus_model.g39691.t1, internal, 8551, 8642
-recovered Augustus_model.g39691.t1, internal, 8778, 9113
-recovered Augustus_model.g39691.t1, internal, 11015, 11106
-recovered Augustus_model.g39691.t1, internal, 11315, 11504
-recovered Augustus_model.g39691.t1, internal, 11596, 11755
Valid prediction for GlimmerHMM_glimmerT_59928-T1
Couldn't classify 11596, 11755
Sorry, prediction snap_scaffold_160-snap.3-T1 fails validation.
(ATG)	 GG	8251-8407	GT	AGG
(ATG)	 AG	8551-8642	GT	CTG
(GTC)	 AG	8778-9113	GT	AGG
(GTG)	 AG	11015-11106	GT	AGG
(GTG)	 AG	11315-11504	GT	AGG
(GGG)	 AG	11596-11755	GT	CGG
-recovered snap_scaffold_160-snap.3-T1, initial, 8251, 8407
-recovered snap_scaffold_160-snap.3-T1, initial, 8551, 8642
-recovered snap_scaffold_160-snap.3-T1, internal, 8551, 8642
-recovered snap_scaffold_160-snap.3-T1, internal, 8778, 9113
-recovered snap_scaffold_160-snap.3-T1, internal, 11015, 11106
-recovered snap_scaffold_160-snap.3-T1, internal, 11315, 11504
-recovered snap_scaffold_160-snap.3-T1, internal, 11596, 11755
Couldn't classify 11596, 11755
Sorry, prediction GlimmerHMM_glimmerT_59929-T1 fails validation.
(ATG)	 CG	8069-8162	GT	GGG
(ATG)	 AG	8551-8642	GT	CTG
(GTC)	 AG	8778-9113	GT	AGG
(GTG)	 AG	11015-11106	GT	AGG
(GTG)	 AG	11315-11504	GT	AGG
(GGG)	 AG	11596-11755	GT	CGG
-recovered GlimmerHMM_glimmerT_59929-T1, initial, 8069, 8162
-recovered GlimmerHMM_glimmerT_59929-T1, initial, 8551, 8642
-recovered GlimmerHMM_glimmerT_59929-T1, internal, 8551, 8642
-recovered GlimmerHMM_glimmerT_59929-T1, internal, 8778, 9113
-recovered GlimmerHMM_glimmerT_59929-T1, internal, 11015, 11106
-recovered GlimmerHMM_glimmerT_59929-T1, internal, 11315, 11504
-recovered GlimmerHMM_glimmerT_59929-T1, internal, 11596, 11755
Couldn't classify 943, 1028
Sorry, prediction snap_scaffold_160-snap.1-T1 fails validation.
(TCT)	 AG	943-1028	GT	ATG
(GGG)	 AG	2453-2491	GT	GAG
(CTC)	 AG	6880-6946	GT	AGG
(GAG)	 AG	7689-8026	GA	GAG
-recovered snap_scaffold_160-snap.1-T1, terminal, 7689, 8026
-recovered snap_scaffold_160-snap.1-T1, internal, 943, 1028
-recovered snap_scaffold_160-snap.1-T1, internal, 2453, 2491
-recovered snap_scaffold_160-snap.1-T1, internal, 6880, 6946

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_160-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_59927-T1
Valid prediction for snap_scaffold_160-snap.4-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8026, rend_intergenic: 1192  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 8710, rend_intergenic: 8251  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 11755, rend_intergenic: 8774  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 11820
-exon list size: 31


building trellis

3.0    
6.1    
9.1    
12.1    
15.2    
18.2    
21.2    
24.2    
27.3    
30.3    
33.3    
36.4    
39.4    
42.4    
45.5    
48.5    
51.5    
54.5    
57.6    
60.6    
63.6    
66.7    
69.7    
72.7    
75.8    
78.8    
81.8    
84.8    
87.9    
90.9    
93.9    
97.0    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 8026, rend_intergenic: 1192  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 8710, rend_intergenic: 8251  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 11755, rend_intergenic: 8774  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support