-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_16/scaffold_16_7288496-7483487

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_16-snap.1333-T1
Valid prediction for snap_scaffold_16-snap.1349-T1
Valid prediction for snap_scaffold_16-snap.1331-T1
Valid prediction for CodingQuarry_transcript_19997-T1
Valid prediction for snap_scaffold_16-snap.1347-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for snap_scaffold_16-snap.1348-T1
Valid prediction for snap_scaffold_16-snap.1358-T1
Valid prediction for HiQ_model.g25725.t1
Valid prediction for snap_scaffold_16-snap.1328-T1
Valid prediction for Augustus_model.g25723.t1
Valid prediction for Augustus_model.g25722.t1
Valid prediction for GlimmerHMM_glimmerT_38544-T1
Valid prediction for Augustus_model.g25727.t1
Valid prediction for snap_scaffold_16-snap.1329-T1
Valid prediction for GlimmerHMM_glimmerT_38554-T1
Valid prediction for GlimmerHMM_glimmerT_38553-T1
Valid prediction for Augustus_model.g25732.t1
Valid prediction for pasa_asmbl_16333.p1
Valid prediction for snap_scaffold_16-snap.1342-T1
Valid prediction for snap_scaffold_16-snap.1363-T1
Valid prediction for snap_scaffold_16-snap.1351-T1
Valid prediction for snap_scaffold_16-snap.1354-T1
Valid prediction for snap_scaffold_16-snap.1335-T1
Valid prediction for GlimmerHMM_glimmerT_38543-T1
Valid prediction for CodingQuarry_transcript_19999-T1
Valid prediction for GlimmerHMM_glimmerT_38555-T1
Valid prediction for Augustus_model.g25729.t1
Valid prediction for snap_scaffold_16-snap.1352-T1
Valid prediction for snap_scaffold_16-snap.1337-T1
Valid prediction for snap_scaffold_16-snap.1332-T1
Valid prediction for Augustus_model.g25730.t1
Valid prediction for GlimmerHMM_glimmerT_38545-T1
Valid prediction for GlimmerHMM_glimmerT_38551-T1
Valid prediction for snap_scaffold_16-snap.1336-T1
Valid prediction for snap_scaffold_16-snap.1360-T1
Valid prediction for Augustus_model.g25731.t1
Valid prediction for pasa_asmbl_16336.p1
Valid prediction for GlimmerHMM_glimmerT_38538-T1
Valid prediction for snap_scaffold_16-snap.1345-T1
Valid prediction for GlimmerHMM_glimmerT_38549-T1
Valid prediction for Augustus_model.g25728.t1
Valid prediction for GlimmerHMM_glimmerT_38537-T1
Valid prediction for HiQ_model.g25724.t1
Valid prediction for GlimmerHMM_glimmerT_38550-T1
Valid prediction for CodingQuarry_transcript_19998-T1
Valid prediction for GlimmerHMM_glimmerT_38548-T1
Valid prediction for GlimmerHMM_glimmerT_38552-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_16-snap.1334-T1
Valid prediction for GlimmerHMM_glimmerT_38547-T1
Valid prediction for snap_scaffold_16-snap.1343-T1
Valid prediction for Augustus_model.g25726.t1
Valid prediction for snap_scaffold_16-snap.1350-T1
Valid prediction for snap_scaffold_16-snap.1356-T1
Valid prediction for Augustus_model.g25721.t1
Valid prediction for snap_scaffold_16-snap.1340-T1
Valid prediction for snap_scaffold_16-snap.1338-T1
Valid prediction for GlimmerHMM_glimmerT_38539-T1
Valid prediction for GlimmerHMM_glimmerT_38541-T1
Valid prediction for snap_scaffold_16-snap.1330-T1
Valid prediction for GlimmerHMM_glimmerT_38546-T1
Valid prediction for snap_scaffold_16-snap.1355-T1
Valid prediction for snap_scaffold_16-snap.1339-T1
Valid prediction for snap_scaffold_16-snap.1344-T1
Valid prediction for snap_scaffold_16-snap.1357-T1
Valid prediction for snap_scaffold_16-snap.1341-T1
Valid prediction for GlimmerHMM_glimmerT_38542-T1
Valid prediction for snap_scaffold_16-snap.1359-T1
Valid prediction for Augustus_model.g25720.t1
Valid prediction for snap_scaffold_16-snap.1346-T1
Valid prediction for snap_scaffold_16-snap.1362-T1
Valid prediction for GlimmerHMM_glimmerT_38540-T1
Valid prediction for snap_scaffold_16-snap.1353-T1
Valid prediction for snap_scaffold_16-snap.1361-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 66354, rend_intergenic: 55146  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85410, rend_intergenic: 83274  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107198, rend_intergenic: 101943  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119329, rend_intergenic: 111091  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121053, rend_intergenic: 120132  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147337, rend_intergenic: 141166  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160992, rend_intergenic: 156156  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171111, rend_intergenic: 164831  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174368, rend_intergenic: 172659  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 194992
-exon list size: 245


building trellis

0.4    
0.8    
1.2    
1.6    
2.0    
2.4    
2.8    
3.2    
3.6    
4.0    
4.5    
4.9    
5.3    
5.7    
6.1    
6.5    
6.9    
7.3    
7.7    
8.1    
8.5    
8.9    
9.3    
9.7    
10.1    
10.5    
10.9    
11.3    
11.7    
12.1    
12.6    
13.0    
13.4    
13.8    
14.2    
14.6    
15.0    
15.4    
15.8    
16.2    
16.6    
17.0    
17.4    
17.8    
18.2    
18.6    
19.0    
19.4    
19.8    
20.2    
20.6    
21.1    
21.5    
21.9    
22.3    
22.7    
23.1    
23.5    
23.9    
24.3    
24.7    
25.1    
25.5    
25.9    
26.3    
26.7    
27.1    
27.5    
27.9    
28.3    
28.7    
29.1    
29.6    
30.0    
30.4    
30.8    
31.2    
31.6    
32.0    
32.4    
32.8    
33.2    
33.6    
34.0    
34.4    
34.8    
35.2    
35.6    
36.0    
36.4    
36.8    
37.2    
37.7    
38.1    
38.5    
38.9    
39.3    
39.7    
40.1    
40.5    
40.9    
41.3    
41.7    
42.1    
42.5    
42.9    
43.3    
43.7    
44.1    
44.5    
44.9    
45.3    
45.7    
46.2    
46.6    
47.0    
47.4    
47.8    
48.2    
48.6    
49.0    
49.4    
49.8    
50.2    
50.6    
51.0    
51.4    
51.8    
52.2    
52.6    
53.0    
53.4    
53.8    
54.3    
54.7    
55.1    
55.5    
55.9    
56.3    
56.7    
57.1    
57.5    
57.9    
58.3    
58.7    
59.1    
59.5    
59.9    
60.3    
60.7    
61.1    
61.5    
61.9    
62.3    
62.8    
63.2    
63.6    
64.0    
64.4    
64.8    
65.2    
65.6    
66.0    
66.4    
66.8    
67.2    
67.6    
68.0    
68.4    
68.8    
69.2    
69.6    
70.0    
70.4    
70.9    
71.3    
71.7    
72.1    
72.5    
72.9    
73.3    
73.7    
74.1    
74.5    
74.9    
75.3    
75.7    
76.1    
76.5    
76.9    
77.3    
77.7    
78.1    
78.5    
78.9    
79.4    
79.8    
80.2    
80.6    
81.0    
81.4    
81.8    
82.2    
82.6    
83.0    
83.4    
83.8    
84.2    
84.6    
85.0    
85.4    
85.8    
86.2    
86.6    
87.0    
87.4    
87.9    
88.3    
88.7    
89.1    
89.5    
89.9    
90.3    
90.7    
91.1    
91.5    
91.9    
92.3    
92.7    
93.1    
93.5    
93.9    
94.3    
94.7    
95.1    
95.5    
96.0    
96.4    
96.8    
97.2    
97.6    
98.0    
98.4    
98.8    
99.2    
99.6    
-found 26 predictions from path traversal
Error with prediction: snap lend_intergenic: 66354, rend_intergenic: 55146  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85410, rend_intergenic: 83274  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107198, rend_intergenic: 101943  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119329, rend_intergenic: 111091  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121053, rend_intergenic: 120132  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147337, rend_intergenic: 141166  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 160992, rend_intergenic: 156156  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171111, rend_intergenic: 164831  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174368, rend_intergenic: 172659  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 13 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 17829
-exon list size: 4


building trellis

16.7    
33.3    
50.0    
66.7    
83.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 1 - 12058
-exon list size: 2


building trellis

25.0    
50.0    
75.0    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support