-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_16/scaffold_16_6375809-6649202

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g25690.t1
Valid prediction for GlimmerHMM_glimmerT_38481-T1
Valid prediction for GlimmerHMM_glimmerT_38484-T1
Valid prediction for GlimmerHMM_glimmerT_38479-T1
Valid prediction for Augustus_model.g25691.t1
Valid prediction for GlimmerHMM_glimmerT_38482-T1
Valid prediction for GlimmerHMM_glimmerT_38486-T1
Valid prediction for snap_scaffold_16-snap.1245-T1
Valid prediction for snap_scaffold_16-snap.1228-T1
Valid prediction for snap_scaffold_16-snap.1238-T1
Valid prediction for GlimmerHMM_glimmerT_38469-T1
Valid prediction for snap_scaffold_16-snap.1223-T1
Couldn't classify 71959, 72004
Couldn't classify 80029, 80074
Sorry, prediction pasa_asmbl_16307.p1 fails validation.
(CGG)	 AG	71959-72004	GT	GTG
(CTT)	 AG	74504-74586	GT	AGG
(GAG)	 AG	76152-76255	GT	AAG
(GAC)	 AG	78835-78927	GT	AGG
(CAT)	 AG	80029-80074	TG	AAT
-recovered pasa_asmbl_16307.p1, internal, 71959, 72004
-recovered pasa_asmbl_16307.p1, internal, 74504, 74586
-recovered pasa_asmbl_16307.p1, internal, 76152, 76255
-recovered pasa_asmbl_16307.p1, internal, 78835, 78927
Valid prediction for snap_scaffold_16-snap.1253-T1
Valid prediction for Augustus_model.g25692.t1
Valid prediction for GlimmerHMM_glimmerT_38474-T1
Valid prediction for snap_scaffold_16-snap.1241-T1
Valid prediction for GlimmerHMM_glimmerT_38471-T1
Valid prediction for Augustus_model.g25679.t1
Valid prediction for snap_scaffold_16-snap.1251-T1
Valid prediction for snap_scaffold_16-snap.1233-T1
Valid prediction for Augustus_model.g25683.t1
Valid prediction for snap_scaffold_16-snap.1224-T1
Valid prediction for Augustus_model.g25680.t1
Valid prediction for snap_scaffold_16-snap.1231-T1
Valid prediction for snap_scaffold_16-snap.1248-T1
Valid prediction for GlimmerHMM_glimmerT_38478-T1
Valid prediction for snap_scaffold_16-snap.1232-T1
Valid prediction for GlimmerHMM_glimmerT_38483-T1
Valid prediction for Augustus_model.g25681.t1
Valid prediction for Augustus_model.g25693.t1
Valid prediction for Augustus_model.g25684.t1
Valid prediction for GlimmerHMM_glimmerT_38468-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_38480-T1
Valid prediction for GlimmerHMM_glimmerT_38477-T1
Valid prediction for Augustus_model.g25685.t1
Valid prediction for GlimmerHMM_glimmerT_38487-T1
Valid prediction for GlimmerHMM_glimmerT_38470-T1
Valid prediction for snap_scaffold_16-snap.1237-T1
Valid prediction for GlimmerHMM_glimmerT_38472-T1
Valid prediction for snap_scaffold_16-snap.1249-T1
Valid prediction for snap_scaffold_16-snap.1246-T1
Valid prediction for GlimmerHMM_glimmerT_38476-T1
Valid prediction for snap_scaffold_16-snap.1252-T1
Valid prediction for GlimmerHMM_glimmerT_38473-T1
Valid prediction for snap_scaffold_16-snap.1250-T1
Valid prediction for snap_scaffold_16-snap.1239-T1
Valid prediction for Augustus_model.g25687.t1
Valid prediction for snap_scaffold_16-snap.1229-T1
Valid prediction for Augustus_model.g25689.t1
Valid prediction for GlimmerHMM_glimmerT_38475-T1
Valid prediction for snap_scaffold_16-snap.1230-T1
Valid prediction for snap_scaffold_16-snap.1225-T1
Valid prediction for snap_scaffold_16-snap.1240-T1
Valid prediction for snap_scaffold_16-snap.1242-T1
Valid prediction for snap_scaffold_16-snap.1235-T1
Valid prediction for Augustus_model.g25682.t1
Valid prediction for Augustus_model.g25688.t1
Valid prediction for snap_scaffold_16-snap.1234-T1
Couldn't classify 183168, 183279
Sorry, prediction pasa_asmbl_17162.p1 fails validation.
(TGC)	 CC	183168-183279	GT	CAG
(TGA)	 AG	183925-184430	CA	AAC
-recovered pasa_asmbl_17162.p1, terminal, 183925, 184430
Valid prediction for snap_scaffold_16-snap.1226-T1
Valid prediction for snap_scaffold_16-snap.1244-T1
Valid prediction for GlimmerHMM_glimmerT_38485-T1
Valid prediction for snap_scaffold_16-snap.1247-T1
Valid prediction for snap_scaffold_16-snap.1236-T1
Valid prediction for snap_scaffold_16-snap.1243-T1
Valid prediction for snap_scaffold_16-snap.1227-T1
Valid prediction for Augustus_model.g25686.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 46391, rend_intergenic: 25107  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56915, rend_intergenic: 47836  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83454, rend_intergenic: 73645  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98382, rend_intergenic: 94433  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112652, rend_intergenic: 108446  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145200, rend_intergenic: 141047  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174233, rend_intergenic: 173661  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 180646, rend_intergenic: 176715  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 273394
-exon list size: 244


building trellis

0.4    
0.8    
1.2    
1.6    
2.0    
2.4    
2.8    
3.3    
3.7    
4.1    
4.5    
4.9    
5.3    
5.7    
6.1    
6.5    
6.9    
7.3    
7.7    
8.1    
8.5    
8.9    
9.3    
9.8    
10.2    
10.6    
11.0    
11.4    
11.8    
12.2    
12.6    
13.0    
13.4    
13.8    
14.2    
14.6    
15.0    
15.4    
15.9    
16.3    
16.7    
17.1    
17.5    
17.9    
18.3    
18.7    
19.1    
19.5    
19.9    
20.3    
20.7    
21.1    
21.5    
22.0    
22.4    
22.8    
23.2    
23.6    
24.0    
24.4    
24.8    
25.2    
25.6    
26.0    
26.4    
26.8    
27.2    
27.6    
28.0    
28.5    
28.9    
29.3    
29.7    
30.1    
30.5    
30.9    
31.3    
31.7    
32.1    
32.5    
32.9    
33.3    
33.7    
34.1    
34.6    
35.0    
35.4    
35.8    
36.2    
36.6    
37.0    
37.4    
37.8    
38.2    
38.6    
39.0    
39.4    
39.8    
40.2    
40.7    
41.1    
41.5    
41.9    
42.3    
42.7    
43.1    
43.5    
43.9    
44.3    
44.7    
45.1    
45.5    
45.9    
46.3    
46.7    
47.2    
47.6    
48.0    
48.4    
48.8    
49.2    
49.6    
50.0    
50.4    
50.8    
51.2    
51.6    
52.0    
52.4    
52.8    
53.3    
53.7    
54.1    
54.5    
54.9    
55.3    
55.7    
56.1    
56.5    
56.9    
57.3    
57.7    
58.1    
58.5    
58.9    
59.3    
59.8    
60.2    
60.6    
61.0    
61.4    
61.8    
62.2    
62.6    
63.0    
63.4    
63.8    
64.2    
64.6    
65.0    
65.4    
65.9    
66.3    
66.7    
67.1    
67.5    
67.9    
68.3    
68.7    
69.1    
69.5    
69.9    
70.3    
70.7    
71.1    
71.5    
72.0    
72.4    
72.8    
73.2    
73.6    
74.0    
74.4    
74.8    
75.2    
75.6    
76.0    
76.4    
76.8    
77.2    
77.6    
78.0    
78.5    
78.9    
79.3    
79.7    
80.1    
80.5    
80.9    
81.3    
81.7    
82.1    
82.5    
82.9    
83.3    
83.7    
84.1    
84.6    
85.0    
85.4    
85.8    
86.2    
86.6    
87.0    
87.4    
87.8    
88.2    
88.6    
89.0    
89.4    
89.8    
90.2    
90.7    
91.1    
91.5    
91.9    
92.3    
92.7    
93.1    
93.5    
93.9    
94.3    
94.7    
95.1    
95.5    
95.9    
96.3    
96.7    
97.2    
97.6    
98.0    
98.4    
98.8    
99.2    
99.6    
-found 25 predictions from path traversal
Error with prediction: snap lend_intergenic: 46391, rend_intergenic: 25107  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 56915, rend_intergenic: 47836  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83454, rend_intergenic: 73645  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98382, rend_intergenic: 94433  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 112652, rend_intergenic: 108446  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 145200, rend_intergenic: 141047  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 174233, rend_intergenic: 173661  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 180646, rend_intergenic: 176715  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 16 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 262720 - 273394
-exon list size: 1


building trellis

33.3    
66.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support