-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_16/scaffold_16_5029087-5233938

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_16-snap.982-T1
Valid prediction for snap_scaffold_16-snap.1006-T1
Valid prediction for GlimmerHMM_glimmerT_38318-T1
Valid prediction for snap_scaffold_16-snap.976-T1
Valid prediction for snap_scaffold_16-snap.992-T1
Valid prediction for snap_scaffold_16-snap.1001-T1
Valid prediction for Augustus_model.g25570.t1
Valid prediction for GlimmerHMM_glimmerT_38324-T1
Valid prediction for GlimmerHMM_glimmerT_38306-T1
Valid prediction for GlimmerHMM_glimmerT_38305-T1
Valid prediction for GlimmerHMM_glimmerT_38323-T1
Valid prediction for GlimmerHMM_glimmerT_38319-T1
Valid prediction for GlimmerHMM_glimmerT_38315-T1
Valid prediction for snap_scaffold_16-snap.978-T1
Valid prediction for GlimmerHMM_glimmerT_38317-T1
Valid prediction for snap_scaffold_16-snap.1000-T1
Valid prediction for Augustus_model.g25569.t1
Valid prediction for snap_scaffold_16-snap.983-T1
Valid prediction for snap_scaffold_16-snap.1007-T1
Valid prediction for snap_scaffold_16-snap.993-T1
Valid prediction for snap_scaffold_16-snap.980-T1
Valid prediction for snap_scaffold_16-snap.987-T1
Valid prediction for snap_scaffold_16-snap.997-T1
Valid prediction for snap_scaffold_16-snap.986-T1
Valid prediction for Augustus_model.g25562.t1
Valid prediction for snap_scaffold_16-snap.973-T1
Valid prediction for snap_scaffold_16-snap.999-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g25568.t1
Valid prediction for GlimmerHMM_glimmerT_38304-T1
Valid prediction for GlimmerHMM_glimmerT_38320-T1
Valid prediction for GlimmerHMM_glimmerT_38314-T1
Valid prediction for Augustus_model.g25563.t1
Valid prediction for snap_scaffold_16-snap.981-T1
Valid prediction for GlimmerHMM_glimmerT_38312-T1
Valid prediction for snap_scaffold_16-snap.1002-T1
Valid prediction for snap_scaffold_16-snap.985-T1
Valid prediction for Augustus_model.g25565.t1
Valid prediction for Augustus_model.g25564.t1
Valid prediction for Augustus_model.g25571.t1
Valid prediction for snap_scaffold_16-snap.984-T1
Valid prediction for snap_scaffold_16-snap.991-T1
Valid prediction for snap_scaffold_16-snap.977-T1
Valid prediction for snap_scaffold_16-snap.975-T1
Valid prediction for snap_scaffold_16-snap.990-T1
Valid prediction for GlimmerHMM_glimmerT_38309-T1
Valid prediction for snap_scaffold_16-snap.1003-T1
Valid prediction for GlimmerHMM_glimmerT_38310-T1
Valid prediction for GlimmerHMM_glimmerT_38321-T1
Valid prediction for Augustus_model.g25566.t1
Valid prediction for GlimmerHMM_glimmerT_38313-T1
Valid prediction for snap_scaffold_16-snap.1008-T1
Valid prediction for Augustus_model.g25561.t1
Valid prediction for Augustus_model.g25572.t1
Valid prediction for snap_scaffold_16-snap.988-T1
Valid prediction for GlimmerHMM_glimmerT_38307-T1
Valid prediction for GlimmerHMM_glimmerT_38308-T1
Valid prediction for snap_scaffold_16-snap.979-T1
Valid prediction for Augustus_model.g25560.t1
Valid prediction for GlimmerHMM_glimmerT_38311-T1
Valid prediction for snap_scaffold_16-snap.974-T1
Valid prediction for snap_scaffold_16-snap.1005-T1
Valid prediction for GlimmerHMM_glimmerT_38316-T1
Valid prediction for snap_scaffold_16-snap.1004-T1
Valid prediction for snap_scaffold_16-snap.996-T1
Valid prediction for snap_scaffold_16-snap.994-T1
Valid prediction for snap_scaffold_16-snap.972-T1
Valid prediction for snap_scaffold_16-snap.995-T1
Valid prediction for GlimmerHMM_glimmerT_38322-T1
Valid prediction for snap_scaffold_16-snap.989-T1
Valid prediction for snap_scaffold_16-snap.998-T1
Valid prediction for Augustus_model.g25567.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5350, rend_intergenic: 4703  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23862, rend_intergenic: 22165  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24402, rend_intergenic: 24144  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32540, rend_intergenic: 26846  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34137, rend_intergenic: 33100  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36799, rend_intergenic: 34230  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67657, rend_intergenic: 60318  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69069, rend_intergenic: 67809  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91252, rend_intergenic: 88833  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92670, rend_intergenic: 91284  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 204852
-exon list size: 246


building trellis

0.4    
0.8    
1.2    
1.6    
2.0    
2.4    
2.8    
3.2    
3.6    
4.0    
4.4    
4.8    
5.2    
5.6    
6.0    
6.5    
6.9    
7.3    
7.7    
8.1    
8.5    
8.9    
9.3    
9.7    
10.1    
10.5    
10.9    
11.3    
11.7    
12.1    
12.5    
12.9    
13.3    
13.7    
14.1    
14.5    
14.9    
15.3    
15.7    
16.1    
16.5    
16.9    
17.3    
17.7    
18.1    
18.5    
19.0    
19.4    
19.8    
20.2    
20.6    
21.0    
21.4    
21.8    
22.2    
22.6    
23.0    
23.4    
23.8    
24.2    
24.6    
25.0    
25.4    
25.8    
26.2    
26.6    
27.0    
27.4    
27.8    
28.2    
28.6    
29.0    
29.4    
29.8    
30.2    
30.6    
31.0    
31.5    
31.9    
32.3    
32.7    
33.1    
33.5    
33.9    
34.3    
34.7    
35.1    
35.5    
35.9    
36.3    
36.7    
37.1    
37.5    
37.9    
38.3    
38.7    
39.1    
39.5    
39.9    
40.3    
40.7    
41.1    
41.5    
41.9    
42.3    
42.7    
43.1    
43.5    
44.0    
44.4    
44.8    
45.2    
45.6    
46.0    
46.4    
46.8    
47.2    
47.6    
48.0    
48.4    
48.8    
49.2    
49.6    
50.0    
50.4    
50.8    
51.2    
51.6    
52.0    
52.4    
52.8    
53.2    
53.6    
54.0    
54.4    
54.8    
55.2    
55.6    
56.0    
56.5    
56.9    
57.3    
57.7    
58.1    
58.5    
58.9    
59.3    
59.7    
60.1    
60.5    
60.9    
61.3    
61.7    
62.1    
62.5    
62.9    
63.3    
63.7    
64.1    
64.5    
64.9    
65.3    
65.7    
66.1    
66.5    
66.9    
67.3    
67.7    
68.1    
68.5    
69.0    
69.4    
69.8    
70.2    
70.6    
71.0    
71.4    
71.8    
72.2    
72.6    
73.0    
73.4    
73.8    
74.2    
74.6    
75.0    
75.4    
75.8    
76.2    
76.6    
77.0    
77.4    
77.8    
78.2    
78.6    
79.0    
79.4    
79.8    
80.2    
80.6    
81.0    
81.5    
81.9    
82.3    
82.7    
83.1    
83.5    
83.9    
84.3    
84.7    
85.1    
85.5    
85.9    
86.3    
86.7    
87.1    
87.5    
87.9    
88.3    
88.7    
89.1    
89.5    
89.9    
90.3    
90.7    
91.1    
91.5    
91.9    
92.3    
92.7    
93.1    
93.5    
94.0    
94.4    
94.8    
95.2    
95.6    
96.0    
96.4    
96.8    
97.2    
97.6    
98.0    
98.4    
98.8    
99.2    
99.6    
-found 23 predictions from path traversal
Error with prediction: snap lend_intergenic: 5350, rend_intergenic: 4703  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23862, rend_intergenic: 22165  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24402, rend_intergenic: 24144  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 32540, rend_intergenic: 26846  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34137, rend_intergenic: 33100  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 36799, rend_intergenic: 34230  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67657, rend_intergenic: 60318  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 69069, rend_intergenic: 67809  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91252, rend_intergenic: 88833  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92670, rend_intergenic: 91284  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 18 predictions persist after filtering for low support