-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_16/scaffold_16_3370332-3503517

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_16-snap.656-T1
Valid prediction for snap_scaffold_16-snap.642-T1
Valid prediction for GlimmerHMM_glimmerT_38082-T1
Valid prediction for GlimmerHMM_glimmerT_38088-T1
Valid prediction for snap_scaffold_16-snap.643-T1
Valid prediction for snap_scaffold_16-snap.649-T1
Valid prediction for GlimmerHMM_glimmerT_38083-T1
Valid prediction for GlimmerHMM_glimmerT_38093-T1
Valid prediction for snap_scaffold_16-snap.660-T1
Valid prediction for snap_scaffold_16-snap.636-T1
Valid prediction for Augustus_model.g25410.t1
Valid prediction for snap_scaffold_16-snap.654-T1
Valid prediction for snap_scaffold_16-snap.647-T1
Valid prediction for Augustus_model.g25403.t1
Valid prediction for snap_scaffold_16-snap.653-T1
Valid prediction for snap_scaffold_16-snap.667-T1
Valid prediction for Augustus_model.g25408.t1
Valid prediction for GlimmerHMM_glimmerT_38086-T1
Valid prediction for snap_scaffold_16-snap.637-T1
Valid prediction for GlimmerHMM_glimmerT_38080-T1
Valid prediction for Augustus_model.g25401.t1
Valid prediction for GlimmerHMM_glimmerT_38087-T1
Valid prediction for GlimmerHMM_glimmerT_38081-T1
Valid prediction for snap_scaffold_16-snap.652-T1
Valid prediction for GlimmerHMM_glimmerT_38100-T1
Valid prediction for GlimmerHMM_glimmerT_38097-T1
Valid prediction for GlimmerHMM_glimmerT_38089-T1
Valid prediction for snap_scaffold_16-snap.651-T1
Valid prediction for snap_scaffold_16-snap.639-T1
Valid prediction for GlimmerHMM_glimmerT_38092-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_16-snap.635-T1
Valid prediction for snap_scaffold_16-snap.655-T1
Valid prediction for snap_scaffold_16-snap.665-T1
Valid prediction for snap_scaffold_16-snap.641-T1
Valid prediction for Augustus_model.g25414.t1
Valid prediction for Augustus_model.g25402.t1
Valid prediction for GlimmerHMM_glimmerT_38091-T1
Valid prediction for GlimmerHMM_glimmerT_38094-T1
Valid prediction for snap_scaffold_16-snap.661-T1
Valid prediction for GlimmerHMM_glimmerT_38096-T1
Valid prediction for Augustus_model.g25404.t1
Valid prediction for Augustus_model.g25399.t1
Valid prediction for Augustus_model.g25406.t1
Valid prediction for GlimmerHMM_glimmerT_38099-T1
Valid prediction for Augustus_model.g25407.t1
Valid prediction for GlimmerHMM_glimmerT_38090-T1
Valid prediction for snap_scaffold_16-snap.644-T1
Couldn't classify 33620, 34480
Sorry, prediction pasa_asmbl_16982.p1 fails validation.
(AGT)	 TA	33620-34480	CT	AAC
Valid prediction for snap_scaffold_16-snap.640-T1
Valid prediction for GlimmerHMM_glimmerT_38098-T1
Valid prediction for snap_scaffold_16-snap.634-T1
Valid prediction for Augustus_model.g25412.t1
Valid prediction for snap_scaffold_16-snap.646-T1
Valid prediction for Augustus_model.g25400.t1
Valid prediction for GlimmerHMM_glimmerT_38095-T1
Valid prediction for GlimmerHMM_glimmerT_38079-T1
Valid prediction for snap_scaffold_16-snap.633-T1
Valid prediction for GlimmerHMM_glimmerT_38084-T1
Valid prediction for snap_scaffold_16-snap.664-T1
Valid prediction for snap_scaffold_16-snap.645-T1
Valid prediction for snap_scaffold_16-snap.666-T1
Valid prediction for GlimmerHMM_glimmerT_38078-T1
Valid prediction for Augustus_model.g25409.t1
Valid prediction for Augustus_model.g25413.t1
Valid prediction for snap_scaffold_16-snap.663-T1
Valid prediction for Augustus_model.g25405.t1
Valid prediction for snap_scaffold_16-snap.658-T1
Valid prediction for snap_scaffold_16-snap.648-T1
Valid prediction for GlimmerHMM_glimmerT_38085-T1
Valid prediction for snap_scaffold_16-snap.662-T1
Valid prediction for snap_scaffold_16-snap.657-T1
Valid prediction for snap_scaffold_16-snap.659-T1
Valid prediction for snap_scaffold_16-snap.650-T1
Valid prediction for GlimmerHMM_glimmerT_38101-T1
Valid prediction for Augustus_model.g25411.t1
Valid prediction for snap_scaffold_16-snap.638-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 21805, rend_intergenic: 18993  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28739, rend_intergenic: 25739  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45158, rend_intergenic: 32652  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66351, rend_intergenic: 62557  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68167, rend_intergenic: 66812  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74316, rend_intergenic: 70183  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88429, rend_intergenic: 87678  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104273, rend_intergenic: 102915  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 133186
-exon list size: 226


building trellis

0.4    
0.9    
1.3    
1.8    
2.2    
2.6    
3.1    
3.5    
3.9    
4.4    
4.8    
5.3    
5.7    
6.1    
6.6    
7.0    
7.5    
7.9    
8.3    
8.8    
9.2    
9.6    
10.1    
10.5    
11.0    
11.4    
11.8    
12.3    
12.7    
13.2    
13.6    
14.0    
14.5    
14.9    
15.4    
15.8    
16.2    
16.7    
17.1    
17.5    
18.0    
18.4    
18.9    
19.3    
19.7    
20.2    
20.6    
21.1    
21.5    
21.9    
22.4    
22.8    
23.2    
23.7    
24.1    
24.6    
25.0    
25.4    
25.9    
26.3    
26.8    
27.2    
27.6    
28.1    
28.5    
28.9    
29.4    
29.8    
30.3    
30.7    
31.1    
31.6    
32.0    
32.5    
32.9    
33.3    
33.8    
34.2    
34.6    
35.1    
35.5    
36.0    
36.4    
36.8    
37.3    
37.7    
38.2    
38.6    
39.0    
39.5    
39.9    
40.4    
40.8    
41.2    
41.7    
42.1    
42.5    
43.0    
43.4    
43.9    
44.3    
44.7    
45.2    
45.6    
46.1    
46.5    
46.9    
47.4    
47.8    
48.2    
48.7    
49.1    
49.6    
50.0    
50.4    
50.9    
51.3    
51.8    
52.2    
52.6    
53.1    
53.5    
53.9    
54.4    
54.8    
55.3    
55.7    
56.1    
56.6    
57.0    
57.5    
57.9    
58.3    
58.8    
59.2    
59.6    
60.1    
60.5    
61.0    
61.4    
61.8    
62.3    
62.7    
63.2    
63.6    
64.0    
64.5    
64.9    
65.4    
65.8    
66.2    
66.7    
67.1    
67.5    
68.0    
68.4    
68.9    
69.3    
69.7    
70.2    
70.6    
71.1    
71.5    
71.9    
72.4    
72.8    
73.2    
73.7    
74.1    
74.6    
75.0    
75.4    
75.9    
76.3    
76.8    
77.2    
77.6    
78.1    
78.5    
78.9    
79.4    
79.8    
80.3    
80.7    
81.1    
81.6    
82.0    
82.5    
82.9    
83.3    
83.8    
84.2    
84.6    
85.1    
85.5    
86.0    
86.4    
86.8    
87.3    
87.7    
88.2    
88.6    
89.0    
89.5    
89.9    
90.4    
90.8    
91.2    
91.7    
92.1    
92.5    
93.0    
93.4    
93.9    
94.3    
94.7    
95.2    
95.6    
96.1    
96.5    
96.9    
97.4    
97.8    
98.2    
98.7    
99.1    
99.6    
-found 22 predictions from path traversal
Error with prediction: snap lend_intergenic: 21805, rend_intergenic: 18993  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 28739, rend_intergenic: 25739  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45158, rend_intergenic: 32652  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66351, rend_intergenic: 62557  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 68167, rend_intergenic: 66812  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74316, rend_intergenic: 70183  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88429, rend_intergenic: 87678  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 104273, rend_intergenic: 102915  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 14 predictions persist after filtering for low support

-building DP trellis

-building trellis in range 119260 - 133186
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support