-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_16/scaffold_16_2787183-2950833

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_16-snap.514-T1
Valid prediction for snap_scaffold_16-snap.526-T1
Valid prediction for snap_scaffold_16-snap.541-T1
Valid prediction for snap_scaffold_16-snap.509-T1
Valid prediction for GlimmerHMM_glimmerT_38025-T1
Valid prediction for snap_scaffold_16-snap.530-T1
Valid prediction for GlimmerHMM_glimmerT_38018-T1
Valid prediction for snap_scaffold_16-snap.522-T1
Valid prediction for snap_scaffold_16-snap.532-T1
Valid prediction for Augustus_model.g25354.t1
Valid prediction for snap_scaffold_16-snap.506-T1
Valid prediction for snap_scaffold_16-snap.501-T1
Valid prediction for HiQ_model.g25356.t1
Valid prediction for GlimmerHMM_glimmerT_38014-T1
Valid prediction for snap_scaffold_16-snap.525-T1
Valid prediction for snap_scaffold_16-snap.517-T1
Valid prediction for Augustus_model.g25351.t1
Valid prediction for CodingQuarry_transcript_19915-T1
Valid prediction for snap_scaffold_16-snap.529-T1
Valid prediction for snap_scaffold_16-snap.524-T1
Valid prediction for GlimmerHMM_glimmerT_38027-T1
Valid prediction for snap_scaffold_16-snap.534-T1
Valid prediction for GlimmerHMM_glimmerT_38026-T1
Valid prediction for snap_scaffold_16-snap.513-T1
Valid prediction for GlimmerHMM_glimmerT_38021-T1
Valid prediction for snap_scaffold_16-snap.502-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_16-snap.505-T1
Valid prediction for GlimmerHMM_glimmerT_38022-T1
Valid prediction for snap_scaffold_16-snap.518-T1
Valid prediction for Augustus_model.g25360.t1
Valid prediction for snap_scaffold_16-snap.528-T1
Valid prediction for GlimmerHMM_glimmerT_38029-T1
Valid prediction for snap_scaffold_16-snap.508-T1
Valid prediction for snap_scaffold_16-snap.539-T1
Valid prediction for snap_scaffold_16-snap.533-T1
Valid prediction for snap_scaffold_16-snap.512-T1
Valid prediction for HiQ_model.g25355.t1
Valid prediction for snap_scaffold_16-snap.521-T1
Valid prediction for Augustus_model.g25353.t1
Valid prediction for GlimmerHMM_glimmerT_38019-T1
Valid prediction for snap_scaffold_16-snap.515-T1
Valid prediction for GlimmerHMM_glimmerT_38015-T1
Valid prediction for GlimmerHMM_glimmerT_38020-T1
Valid prediction for GlimmerHMM_glimmerT_38032-T1
Valid prediction for snap_scaffold_16-snap.535-T1
Valid prediction for Augustus_model.g25352.t1
Valid prediction for GlimmerHMM_glimmerT_38028-T1
Valid prediction for GlimmerHMM_glimmerT_38017-T1
Valid prediction for GlimmerHMM_glimmerT_38013-T1
Valid prediction for Augustus_model.g25358.t1
Valid prediction for snap_scaffold_16-snap.536-T1
Valid prediction for CodingQuarry_transcript_19914-T1
Valid prediction for snap_scaffold_16-snap.511-T1
Valid prediction for snap_scaffold_16-snap.516-T1
Valid prediction for snap_scaffold_16-snap.503-T1
Valid prediction for snap_scaffold_16-snap.520-T1
Valid prediction for snap_scaffold_16-snap.523-T1
Valid prediction for GlimmerHMM_glimmerT_38024-T1
Valid prediction for snap_scaffold_16-snap.504-T1
Valid prediction for Augustus_model.g25350.t1
Valid prediction for snap_scaffold_16-snap.531-T1
Valid prediction for GlimmerHMM_glimmerT_38023-T1
Valid prediction for snap_scaffold_16-snap.538-T1
Valid prediction for snap_scaffold_16-snap.500-T1
Valid prediction for snap_scaffold_16-snap.537-T1
Valid prediction for Augustus_model.g25357.t1
Valid prediction for GlimmerHMM_glimmerT_38031-T1
Valid prediction for GlimmerHMM_glimmerT_38030-T1
Valid prediction for Augustus_model.g25359.t1
Valid prediction for snap_scaffold_16-snap.507-T1
Valid prediction for pasa_asmbl_16977.p2
Valid prediction for GlimmerHMM_glimmerT_38016-T1
Valid prediction for snap_scaffold_16-snap.519-T1
Valid prediction for snap_scaffold_16-snap.510-T1
Valid prediction for snap_scaffold_16-snap.527-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6488, rend_intergenic: 3846  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9412, rend_intergenic: 7239  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15542, rend_intergenic: 10730  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30105, rend_intergenic: 24619  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44300, rend_intergenic: 36339  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66118, rend_intergenic: 44963  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76700, rend_intergenic: 72481  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90415, rend_intergenic: 83293  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106050, rend_intergenic: 102780  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118288, rend_intergenic: 106444  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158905, rend_intergenic: 119722  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 163651
-exon list size: 231


building trellis

0.4    
0.9    
1.3    
1.7    
2.1    
2.6    
3.0    
3.4    
3.9    
4.3    
4.7    
5.2    
5.6    
6.0    
6.4    
6.9    
7.3    
7.7    
8.2    
8.6    
9.0    
9.4    
9.9    
10.3    
10.7    
11.2    
11.6    
12.0    
12.4    
12.9    
13.3    
13.7    
14.2    
14.6    
15.0    
15.5    
15.9    
16.3    
16.7    
17.2    
17.6    
18.0    
18.5    
18.9    
19.3    
19.7    
20.2    
20.6    
21.0    
21.5    
21.9    
22.3    
22.7    
23.2    
23.6    
24.0    
24.5    
24.9    
25.3    
25.8    
26.2    
26.6    
27.0    
27.5    
27.9    
28.3    
28.8    
29.2    
29.6    
30.0    
30.5    
30.9    
31.3    
31.8    
32.2    
32.6    
33.0    
33.5    
33.9    
34.3    
34.8    
35.2    
35.6    
36.1    
36.5    
36.9    
37.3    
37.8    
38.2    
38.6    
39.1    
39.5    
39.9    
40.3    
40.8    
41.2    
41.6    
42.1    
42.5    
42.9    
43.3    
43.8    
44.2    
44.6    
45.1    
45.5    
45.9    
46.4    
46.8    
47.2    
47.6    
48.1    
48.5    
48.9    
49.4    
49.8    
50.2    
50.6    
51.1    
51.5    
51.9    
52.4    
52.8    
53.2    
53.6    
54.1    
54.5    
54.9    
55.4    
55.8    
56.2    
56.7    
57.1    
57.5    
57.9    
58.4    
58.8    
59.2    
59.7    
60.1    
60.5    
60.9    
61.4    
61.8    
62.2    
62.7    
63.1    
63.5    
63.9    
64.4    
64.8    
65.2    
65.7    
66.1    
66.5    
67.0    
67.4    
67.8    
68.2    
68.7    
69.1    
69.5    
70.0    
70.4    
70.8    
71.2    
71.7    
72.1    
72.5    
73.0    
73.4    
73.8    
74.2    
74.7    
75.1    
75.5    
76.0    
76.4    
76.8    
77.3    
77.7    
78.1    
78.5    
79.0    
79.4    
79.8    
80.3    
80.7    
81.1    
81.5    
82.0    
82.4    
82.8    
83.3    
83.7    
84.1    
84.5    
85.0    
85.4    
85.8    
86.3    
86.7    
87.1    
87.6    
88.0    
88.4    
88.8    
89.3    
89.7    
90.1    
90.6    
91.0    
91.4    
91.8    
92.3    
92.7    
93.1    
93.6    
94.0    
94.4    
94.8    
95.3    
95.7    
96.1    
96.6    
97.0    
97.4    
97.9    
98.3    
98.7    
99.1    
99.6    
-found 29 predictions from path traversal
Error with prediction: snap lend_intergenic: 6488, rend_intergenic: 3846  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9412, rend_intergenic: 7239  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 15542, rend_intergenic: 10730  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30105, rend_intergenic: 24619  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 44300, rend_intergenic: 36339  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66118, rend_intergenic: 44963  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76700, rend_intergenic: 72481  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90415, rend_intergenic: 83293  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106050, rend_intergenic: 102780  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 118288, rend_intergenic: 106444  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158905, rend_intergenic: 119722  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 12 predictions persist after filtering for low support