-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_16/scaffold_16_2658585-2790622

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_37994-T1
Valid prediction for snap_scaffold_16-snap.483-T1
Valid prediction for Augustus_model.g25341.t1
Valid prediction for snap_scaffold_16-snap.498-T1
Valid prediction for GlimmerHMM_glimmerT_37996-T1
Valid prediction for GlimmerHMM_glimmerT_38006-T1
Valid prediction for GlimmerHMM_glimmerT_37988-T1
Couldn't classify 39371, 39462
Couldn't classify 43200, 43310
Sorry, prediction pasa_asmbl_16763.p2 fails validation.
(ACC)	 AC	39371-39462	GT	AAG
(GTT)	 AG	41727-41835	GT	ACG
(ACC)	 AG	43200-43310	AA	GCA
-recovered pasa_asmbl_16763.p2, internal, 41727, 41835
Valid prediction for snap_scaffold_16-snap.469-T1
Valid prediction for GlimmerHMM_glimmerT_38005-T1
Valid prediction for Augustus_model.g25335.t1
Valid prediction for snap_scaffold_16-snap.478-T1
Valid prediction for Augustus_model.g25349.t1
Valid prediction for snap_scaffold_16-snap.480-T1
Valid prediction for GlimmerHMM_glimmerT_37993-T1
Valid prediction for GlimmerHMM_glimmerT_37992-T1
Valid prediction for snap_scaffold_16-snap.494-T1
Valid prediction for snap_scaffold_16-snap.475-T1
Valid prediction for snap_scaffold_16-snap.491-T1
Valid prediction for snap_scaffold_16-snap.468-T1
Valid prediction for snap_scaffold_16-snap.490-T1
Valid prediction for snap_scaffold_16-snap.471-T1
Valid prediction for snap_scaffold_16-snap.484-T1
Valid prediction for snap_scaffold_16-snap.464-T1
Valid prediction for Augustus_model.g25332.t1
Valid prediction for Augustus_model.g25347.t1
Valid prediction for GlimmerHMM_glimmerT_38009-T1
Valid prediction for GlimmerHMM_glimmerT_37986-T1
Couldn't classify 7498, 7573
Couldn't classify 12296, 12359
Sorry, prediction pasa_asmbl_16132.p1 fails validation.
(ACA)	 CC	7498-7573	GT	TGG
(GTC)	 AG	7659-7744	GT	TGG
(GCC)	 AG	8585-8659	GT	AGG
(ATG)	 AG	10635-10831	GT	AGG
(AAG)	 AG	12296-12359	TG	CAT
-recovered pasa_asmbl_16132.p1, initial, 10635, 10831
-recovered pasa_asmbl_16132.p1, internal, 7659, 7744
-recovered pasa_asmbl_16132.p1, internal, 8585, 8659
-recovered pasa_asmbl_16132.p1, internal, 10635, 10831
Valid prediction for Augustus_model.g25339.t1
Valid prediction for Augustus_model.g25331.t1
Valid prediction for Augustus_model.g25343.t1
Valid prediction for Augustus_model.g25328.t1
Valid prediction for snap_scaffold_16-snap.487-T1
Valid prediction for snap_scaffold_16-snap.466-T1
Valid prediction for Augustus_model.g25348.t1
Valid prediction for snap_scaffold_16-snap.492-T1
Valid prediction for snap_scaffold_16-snap.488-T1
Valid prediction for GlimmerHMM_glimmerT_38003-T1
Valid prediction for snap_scaffold_16-snap.496-T1
Valid prediction for Augustus_model.g25338.t1
Valid prediction for snap_scaffold_16-snap.473-T1
Valid prediction for snap_scaffold_16-snap.470-T1
Valid prediction for Augustus_model.g25333.t1
Valid prediction for GlimmerHMM_glimmerT_37985-T1
Valid prediction for Augustus_model.g25334.t1
Valid prediction for GlimmerHMM_glimmerT_38000-T1
Valid prediction for GlimmerHMM_glimmerT_38004-T1
Valid prediction for GlimmerHMM_glimmerT_38008-T1
Valid prediction for Augustus_model.g25330.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_37989-T1
Valid prediction for GlimmerHMM_glimmerT_37990-T1
Valid prediction for Augustus_model.g25346.t1
Valid prediction for snap_scaffold_16-snap.485-T1
Valid prediction for snap_scaffold_16-snap.477-T1
Valid prediction for snap_scaffold_16-snap.497-T1
Valid prediction for snap_scaffold_16-snap.474-T1
Valid prediction for snap_scaffold_16-snap.476-T1
Valid prediction for GlimmerHMM_glimmerT_37987-T1
Valid prediction for snap_scaffold_16-snap.489-T1
Valid prediction for GlimmerHMM_glimmerT_38010-T1
Valid prediction for Augustus_model.g25340.t1
Valid prediction for GlimmerHMM_glimmerT_37995-T1
Valid prediction for snap_scaffold_16-snap.499-T1
Valid prediction for GlimmerHMM_glimmerT_37999-T1
Valid prediction for Augustus_model.g25344.t1
Valid prediction for Augustus_model.g25342.t1
Valid prediction for GlimmerHMM_glimmerT_37997-T1
Valid prediction for snap_scaffold_16-snap.479-T1
Valid prediction for snap_scaffold_16-snap.495-T1
Valid prediction for Augustus_model.g25337.t1
Valid prediction for GlimmerHMM_glimmerT_38011-T1
Valid prediction for Augustus_model.g25329.t1
Valid prediction for GlimmerHMM_glimmerT_37984-T1
Valid prediction for GlimmerHMM_glimmerT_37991-T1
Valid prediction for snap_scaffold_16-snap.472-T1
Valid prediction for GlimmerHMM_glimmerT_37983-T1
Valid prediction for GlimmerHMM_glimmerT_38007-T1
Valid prediction for snap_scaffold_16-snap.482-T1
Valid prediction for snap_scaffold_16-snap.481-T1
Valid prediction for GlimmerHMM_glimmerT_37998-T1
Valid prediction for snap_scaffold_16-snap.465-T1
Valid prediction for snap_scaffold_16-snap.493-T1
Valid prediction for GlimmerHMM_glimmerT_38001-T1
Valid prediction for Augustus_model.g25345.t1
Valid prediction for Augustus_model.g25336.t1
Valid prediction for Augustus_model.g25327.t1
Valid prediction for snap_scaffold_16-snap.486-T1
Valid prediction for snap_scaffold_16-snap.467-T1
Valid prediction for GlimmerHMM_glimmerT_38002-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9274, rend_intergenic: 3565  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16341, rend_intergenic: 11798  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37553, rend_intergenic: 33321  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40134, rend_intergenic: 39541  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42267, rend_intergenic: 40267  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45216, rend_intergenic: 42288  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55548, rend_intergenic: 53085  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57871, rend_intergenic: 57262  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91660, rend_intergenic: 88716  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116979, rend_intergenic: 115602  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120952, rend_intergenic: 117339  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123944, rend_intergenic: 121001  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130871, rend_intergenic: 126358  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 132038
-exon list size: 326


building trellis

0.3    
0.6    
0.9    
1.2    
1.5    
1.8    
2.1    
2.4    
2.7    
3.0    
3.4    
3.7    
4.0    
4.3    
4.6    
4.9    
5.2    
5.5    
5.8    
6.1    
6.4    
6.7    
7.0    
7.3    
7.6    
7.9    
8.2    
8.5    
8.8    
9.1    
9.5    
9.8    
10.1    
10.4    
10.7    
11.0    
11.3    
11.6    
11.9    
12.2    
12.5    
12.8    
13.1    
13.4    
13.7    
14.0    
14.3    
14.6    
14.9    
15.2    
15.5    
15.9    
16.2    
16.5    
16.8    
17.1    
17.4    
17.7    
18.0    
18.3    
18.6    
18.9    
19.2    
19.5    
19.8    
20.1    
20.4    
20.7    
21.0    
21.3    
21.6    
22.0    
22.3    
22.6    
22.9    
23.2    
23.5    
23.8    
24.1    
24.4    
24.7    
25.0    
25.3    
25.6    
25.9    
26.2    
26.5    
26.8    
27.1    
27.4    
27.7    
28.0    
28.4    
28.7    
29.0    
29.3    
29.6    
29.9    
30.2    
30.5    
30.8    
31.1    
31.4    
31.7    
32.0    
32.3    
32.6    
32.9    
33.2    
33.5    
33.8    
34.1    
34.5    
34.8    
35.1    
35.4    
35.7    
36.0    
36.3    
36.6    
36.9    
37.2    
37.5    
37.8    
38.1    
38.4    
38.7    
39.0    
39.3    
39.6    
39.9    
40.2    
40.5    
40.9    
41.2    
41.5    
41.8    
42.1    
42.4    
42.7    
43.0    
43.3    
43.6    
43.9    
44.2    
44.5    
44.8    
45.1    
45.4    
45.7    
46.0    
46.3    
46.6    
47.0    
47.3    
47.6    
47.9    
48.2    
48.5    
48.8    
49.1    
49.4    
49.7    
50.0    
50.3    
50.6    
50.9    
51.2    
51.5    
51.8    
52.1    
52.4    
52.7    
53.0    
53.4    
53.7    
54.0    
54.3    
54.6    
54.9    
55.2    
55.5    
55.8    
56.1    
56.4    
56.7    
57.0    
57.3    
57.6    
57.9    
58.2    
58.5    
58.8    
59.1    
59.5    
59.8    
60.1    
60.4    
60.7    
61.0    
61.3    
61.6    
61.9    
62.2    
62.5    
62.8    
63.1    
63.4    
63.7    
64.0    
64.3    
64.6    
64.9    
65.2    
65.5    
65.9    
66.2    
66.5    
66.8    
67.1    
67.4    
67.7    
68.0    
68.3    
68.6    
68.9    
69.2    
69.5    
69.8    
70.1    
70.4    
70.7    
71.0    
71.3    
71.6    
72.0    
72.3    
72.6    
72.9    
73.2    
73.5    
73.8    
74.1    
74.4    
74.7    
75.0    
75.3    
75.6    
75.9    
76.2    
76.5    
76.8    
77.1    
77.4    
77.7    
78.0    
78.4    
78.7    
79.0    
79.3    
79.6    
79.9    
80.2    
80.5    
80.8    
81.1    
81.4    
81.7    
82.0    
82.3    
82.6    
82.9    
83.2    
83.5    
83.8    
84.1    
84.5    
84.8    
85.1    
85.4    
85.7    
86.0    
86.3    
86.6    
86.9    
87.2    
87.5    
87.8    
88.1    
88.4    
88.7    
89.0    
89.3    
89.6    
89.9    
90.2    
90.5    
90.9    
91.2    
91.5    
91.8    
92.1    
92.4    
92.7    
93.0    
93.3    
93.6    
93.9    
94.2    
94.5    
94.8    
95.1    
95.4    
95.7    
96.0    
96.3    
96.6    
97.0    
97.3    
97.6    
97.9    
98.2    
98.5    
98.8    
99.1    
99.4    
99.7    
-found 28 predictions from path traversal
Error with prediction: snap lend_intergenic: 9274, rend_intergenic: 3565  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16341, rend_intergenic: 11798  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37553, rend_intergenic: 33321  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40134, rend_intergenic: 39541  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42267, rend_intergenic: 40267  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45216, rend_intergenic: 42288  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55548, rend_intergenic: 53085  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 57871, rend_intergenic: 57262  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91660, rend_intergenic: 88716  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 116979, rend_intergenic: 115602  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 120952, rend_intergenic: 117339  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123944, rend_intergenic: 121001  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130871, rend_intergenic: 126358  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 17 predictions persist after filtering for low support