-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_16/scaffold_16_2474721-2662148 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g25319.t1 Valid prediction for GlimmerHMM_glimmerT_37969-T1 Valid prediction for GlimmerHMM_glimmerT_37982-T1 Valid prediction for Augustus_model.g25321.t1 Valid prediction for snap_scaffold_16-snap.425-T1 Valid prediction for GlimmerHMM_glimmerT_37958-T1 Valid prediction for snap_scaffold_16-snap.431-T1 Valid prediction for GlimmerHMM_glimmerT_37947-T1 Valid prediction for GlimmerHMM_glimmerT_37962-T1 Valid prediction for snap_scaffold_16-snap.438-T1 Valid prediction for snap_scaffold_16-snap.426-T1 Valid prediction for snap_scaffold_16-snap.417-T1 Valid prediction for GlimmerHMM_glimmerT_37974-T1 Valid prediction for snap_scaffold_16-snap.427-T1 Valid prediction for GlimmerHMM_glimmerT_37951-T1 Valid prediction for Augustus_model.g25302.t1 Valid prediction for snap_scaffold_16-snap.450-T1 Valid prediction for snap_scaffold_16-snap.433-T1 Valid prediction for GlimmerHMM_glimmerT_37970-T1 Valid prediction for snap_scaffold_16-snap.420-T1 Valid prediction for Augustus_model.g25317.t1 Valid prediction for Augustus_model.g25322.t1 Valid prediction for GlimmerHMM_glimmerT_37956-T1 Valid prediction for GlimmerHMM_glimmerT_37952-T1 Valid prediction for GlimmerHMM_glimmerT_37976-T1 Valid prediction for snap_scaffold_16-snap.439-T1 Valid prediction for Augustus_model.g25315.t1 Valid prediction for snap_scaffold_16-snap.463-T1 Valid prediction for snap_scaffold_16-snap.449-T1 Valid prediction for snap_scaffold_16-snap.419-T1 Valid prediction for Augustus_model.g25323.t1 Valid prediction for snap_scaffold_16-snap.453-T1 Valid prediction for Augustus_model.g25325.t1 Valid prediction for snap_scaffold_16-snap.428-T1 Valid prediction for snap_scaffold_16-snap.423-T1 Valid prediction for snap_scaffold_16-snap.436-T1 Valid prediction for snap_scaffold_16-snap.455-T1 Valid prediction for GlimmerHMM_glimmerT_37946-T1 Valid prediction for snap_scaffold_16-snap.454-T1 Valid prediction for Augustus_model.g25324.t1 Valid prediction for snap_scaffold_16-snap.444-T1 Valid prediction for GlimmerHMM_glimmerT_37954-T1 Valid prediction for GlimmerHMM_glimmerT_37972-T1 Valid prediction for GlimmerHMM_glimmerT_37965-T1 Valid prediction for Augustus_model.g25305.t1 Valid prediction for GlimmerHMM_glimmerT_37960-T1 Valid prediction for GlimmerHMM_glimmerT_37973-T1 Valid prediction for Augustus_model.g25309.t1 Valid prediction for GlimmerHMM_glimmerT_37966-T1 Valid prediction for GlimmerHMM_glimmerT_37950-T1 Valid prediction for snap_scaffold_16-snap.456-T1 Valid prediction for snap_scaffold_16-snap.460-T1 Valid prediction for GlimmerHMM_glimmerT_37949-T1 Valid prediction for snap_scaffold_16-snap.447-T1 Valid prediction for GlimmerHMM_glimmerT_37978-T1 Valid prediction for Augustus_model.g25306.t1 Valid prediction for snap_scaffold_16-snap.430-T1 Valid prediction for GlimmerHMM_glimmerT_37980-T1 Valid prediction for snap_scaffold_16-snap.434-T1 Valid prediction for GlimmerHMM_glimmerT_37959-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g25318.t1 Valid prediction for snap_scaffold_16-snap.461-T1 Couldn't classify 83900, 83915 Sorry, prediction pasa_asmbl_16974.p1 fails validation. (GCG) TG 83900-83915 GT GGG (TCC) AG 86297-86419 GT GGG (CCC) AG 87279-87427 GT AGG (GTG) AG 87579-87700 GT GGG (GAG) AG 88758-88956 GT AGG (GCG) AG 89142-89269 GT AGG (GAT) AG 89443-89512 GA GAG -recovered pasa_asmbl_16974.p1, terminal, 89443, 89512 -recovered pasa_asmbl_16974.p1, internal, 86297, 86419 -recovered pasa_asmbl_16974.p1, internal, 87279, 87427 -recovered pasa_asmbl_16974.p1, internal, 87579, 87700 -recovered pasa_asmbl_16974.p1, internal, 88758, 88956 -recovered pasa_asmbl_16974.p1, internal, 89142, 89269 Valid prediction for snap_scaffold_16-snap.416-T1 Valid prediction for snap_scaffold_16-snap.462-T1 Valid prediction for Augustus_model.g25301.t1 Valid prediction for snap_scaffold_16-snap.458-T1 Valid prediction for GlimmerHMM_glimmerT_37961-T1 Valid prediction for HiQ_model.g25312.t1 Valid prediction for Augustus_model.g25308.t1 Valid prediction for snap_scaffold_16-snap.459-T1 Valid prediction for snap_scaffold_16-snap.457-T1 Valid prediction for Augustus_model.g25311.t1 Valid prediction for snap_scaffold_16-snap.429-T1 Valid prediction for snap_scaffold_16-snap.432-T1 Valid prediction for snap_scaffold_16-snap.437-T1 Valid prediction for snap_scaffold_16-snap.422-T1 Valid prediction for GlimmerHMM_glimmerT_37967-T1 Valid prediction for GlimmerHMM_glimmerT_37955-T1 Valid prediction for Augustus_model.g25310.t1 Valid prediction for GlimmerHMM_glimmerT_37968-T1 Valid prediction for GlimmerHMM_glimmerT_37964-T1 Valid prediction for GlimmerHMM_glimmerT_37979-T1 Valid prediction for snap_scaffold_16-snap.421-T1 Valid prediction for snap_scaffold_16-snap.452-T1 Sorry, intron length (7) is less than minimum required (10) Valid prediction for snap_scaffold_16-snap.446-T1 Valid prediction for GlimmerHMM_glimmerT_37948-T1 Valid prediction for snap_scaffold_16-snap.442-T1 Valid prediction for snap_scaffold_16-snap.435-T1 Valid prediction for GlimmerHMM_glimmerT_37981-T1 Valid prediction for GlimmerHMM_glimmerT_37971-T1 Valid prediction for GlimmerHMM_glimmerT_37975-T1 Valid prediction for Augustus_model.g25314.t1 Valid prediction for Augustus_model.g25304.t1 Valid prediction for GlimmerHMM_glimmerT_37953-T1 Valid prediction for Augustus_model.g25313.t1 Valid prediction for snap_scaffold_16-snap.418-T1 Valid prediction for Augustus_model.g25303.t1 Valid prediction for Augustus_model.g25316.t1 Valid prediction for snap_scaffold_16-snap.441-T1 Valid prediction for snap_scaffold_16-snap.443-T1 Valid prediction for Augustus_model.g25320.t1 Valid prediction for snap_scaffold_16-snap.445-T1 Valid prediction for GlimmerHMM_glimmerT_37977-T1 Valid prediction for snap_scaffold_16-snap.448-T1 Couldn't classify 98213, 98304 Sorry, prediction pasa_asmbl_16971.p1 fails validation. (ATG) AA 95520-95595 GT AGG (GGG) AG 97219-97497 GT AGG (ATC) AG 98213-98304 GC CGG -recovered pasa_asmbl_16971.p1, initial, 95520, 95595 -recovered pasa_asmbl_16971.p1, internal, 97219, 97497 -recovered pasa_asmbl_16971.p1, internal, 98213, 98304 Valid prediction for CodingQuarry_transcript_19912-T1 Valid prediction for snap_scaffold_16-snap.424-T1 Valid prediction for snap_scaffold_16-snap.440-T1 Valid prediction for Augustus_model.g25326.t1 Valid prediction for GlimmerHMM_glimmerT_37963-T1 Valid prediction for Augustus_model.g25307.t1 Valid prediction for snap_scaffold_16-snap.451-T1 Valid prediction for GlimmerHMM_glimmerT_37957-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: GlimmerHMM lend_intergenic: 81096, rend_intergenic: 81093 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 5450, rend_intergenic: 4586 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 16321, rend_intergenic: 5465 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 23253, rend_intergenic: 16343 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 29104, rend_intergenic: 23859 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 36404, rend_intergenic: 29752 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 37448, rend_intergenic: 37101 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 56610, rend_intergenic: 37544 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 59313, rend_intergenic: 57403 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 65540, rend_intergenic: 63211 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 67669, rend_intergenic: 65754 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 72194, rend_intergenic: 68988 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 79534, rend_intergenic: 75632 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 86632, rend_intergenic: 83384 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 123541, rend_intergenic: 117188 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 127573, rend_intergenic: 126022 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 127769, rend_intergenic: 127658 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 131470, rend_intergenic: 127785 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 141970, rend_intergenic: 134246 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 151993, rend_intergenic: 142040 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 166943, rend_intergenic: 156060 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 170349, rend_intergenic: 167231 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 181713, rend_intergenic: 171308 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 187428 -exon list size: 462 building trellis 0.2 0.4 0.6 0.9 1.1 1.3 1.5 1.7 1.9 2.2 2.4 2.6 2.8 3.0 3.2 3.4 3.7 3.9 4.1 4.3 4.5 4.7 5.0 5.2 5.4 5.6 5.8 6.0 6.2 6.5 6.7 6.9 7.1 7.3 7.5 7.8 8.0 8.2 8.4 8.6 8.8 9.1 9.3 9.5 9.7 9.9 10.1 10.3 10.6 10.8 11.0 11.2 11.4 11.6 11.9 12.1 12.3 12.5 12.7 12.9 13.1 13.4 13.6 13.8 14.0 14.2 14.4 14.7 14.9 15.1 15.3 15.5 15.7 15.9 16.2 16.4 16.6 16.8 17.0 17.2 17.5 17.7 17.9 18.1 18.3 18.5 18.8 19.0 19.2 19.4 19.6 19.8 20.0 20.3 20.5 20.7 20.9 21.1 21.3 21.6 21.8 22.0 22.2 22.4 22.6 22.8 23.1 23.3 23.5 23.7 23.9 24.1 24.4 24.6 24.8 25.0 25.2 25.4 25.6 25.9 26.1 26.3 26.5 26.7 26.9 27.2 27.4 27.6 27.8 28.0 28.2 28.4 28.7 28.9 29.1 29.3 29.5 29.7 30.0 30.2 30.4 30.6 30.8 31.0 31.2 31.5 31.7 31.9 32.1 32.3 32.5 32.8 33.0 33.2 33.4 33.6 33.8 34.1 34.3 34.5 34.7 34.9 35.1 35.3 35.6 35.8 36.0 36.2 36.4 36.6 36.9 37.1 37.3 37.5 37.7 37.9 38.1 38.4 38.6 38.8 39.0 39.2 39.4 39.7 39.9 40.1 40.3 40.5 40.7 40.9 41.2 41.4 41.6 41.8 42.0 42.2 42.5 42.7 42.9 43.1 43.3 43.5 43.8 44.0 44.2 44.4 44.6 44.8 45.0 45.3 45.5 45.7 45.9 46.1 46.3 46.6 46.8 47.0 47.2 47.4 47.6 47.8 48.1 48.3 48.5 48.7 48.9 49.1 49.4 49.6 49.8 50.0 50.2 50.4 50.6 50.9 51.1 51.3 51.5 51.7 51.9 52.2 52.4 52.6 52.8 53.0 53.2 53.4 53.7 53.9 54.1 54.3 54.5 54.7 55.0 55.2 55.4 55.6 55.8 56.0 56.2 56.5 56.7 56.9 57.1 57.3 57.5 57.8 58.0 58.2 58.4 58.6 58.8 59.1 59.3 59.5 59.7 59.9 60.1 60.3 60.6 60.8 61.0 61.2 61.4 61.6 61.9 62.1 62.3 62.5 62.7 62.9 63.1 63.4 63.6 63.8 64.0 64.2 64.4 64.7 64.9 65.1 65.3 65.5 65.7 65.9 66.2 66.4 66.6 66.8 67.0 67.2 67.5 67.7 67.9 68.1 68.3 68.5 68.8 69.0 69.2 69.4 69.6 69.8 70.0 70.3 70.5 70.7 70.9 71.1 71.3 71.6 71.8 72.0 72.2 72.4 72.6 72.8 73.1 73.3 73.5 73.7 73.9 74.1 74.4 74.6 74.8 75.0 75.2 75.4 75.6 75.9 76.1 76.3 76.5 76.7 76.9 77.2 77.4 77.6 77.8 78.0 78.2 78.4 78.7 78.9 79.1 79.3 79.5 79.7 80.0 80.2 80.4 80.6 80.8 81.0 81.2 81.5 81.7 81.9 82.1 82.3 82.5 82.8 83.0 83.2 83.4 83.6 83.8 84.1 84.3 84.5 84.7 84.9 85.1 85.3 85.6 85.8 86.0 86.2 86.4 86.6 86.9 87.1 87.3 87.5 87.7 87.9 88.1 88.4 88.6 88.8 89.0 89.2 89.4 89.7 89.9 90.1 90.3 90.5 90.7 90.9 91.2 91.4 91.6 91.8 92.0 92.2 92.5 92.7 92.9 93.1 93.3 93.5 93.8 94.0 94.2 94.4 94.6 94.8 95.0 95.3 95.5 95.7 95.9 96.1 96.3 96.6 96.8 97.0 97.2 97.4 97.6 97.8 98.1 98.3 98.5 98.7 98.9 99.1 99.4 99.6 99.8 -found 41 predictions from path traversal Error with prediction: GlimmerHMM lend_intergenic: 81096, rend_intergenic: 81093 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 5450, rend_intergenic: 4586 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 16321, rend_intergenic: 5465 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 23253, rend_intergenic: 16343 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 29104, rend_intergenic: 23859 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 36404, rend_intergenic: 29752 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 37448, rend_intergenic: 37101 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 56610, rend_intergenic: 37544 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 59313, rend_intergenic: 57403 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 65540, rend_intergenic: 63211 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 67669, rend_intergenic: 65754 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 72194, rend_intergenic: 68988 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 79534, rend_intergenic: 75632 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 86632, rend_intergenic: 83384 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 123541, rend_intergenic: 117188 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 127573, rend_intergenic: 126022 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 127769, rend_intergenic: 127658 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 131470, rend_intergenic: 127785 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 141970, rend_intergenic: 134246 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 151993, rend_intergenic: 142040 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 166943, rend_intergenic: 156060 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 170349, rend_intergenic: 167231 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 181713, rend_intergenic: 171308 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 19 predictions persist after filtering for low support