-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_16/scaffold_16_14876098-15049017

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_16-snap.2871-T1
Valid prediction for snap_scaffold_16-snap.2864-T1
Valid prediction for Augustus_model.g26347.t1
Valid prediction for Augustus_model.g26349.t1
Valid prediction for GlimmerHMM_glimmerT_39520-T1
Valid prediction for snap_scaffold_16-snap.2870-T1
Valid prediction for snap_scaffold_16-snap.2861-T1
Valid prediction for GlimmerHMM_glimmerT_39512-T1
Valid prediction for GlimmerHMM_glimmerT_39523-T1
Valid prediction for snap_scaffold_16-snap.2876-T1
Valid prediction for snap_scaffold_16-snap.2887-T1
Valid prediction for GlimmerHMM_glimmerT_39501-T1
Valid prediction for GlimmerHMM_glimmerT_39527-T1
Valid prediction for snap_scaffold_16-snap.2883-T1
Valid prediction for snap_scaffold_16-snap.2869-T1
Valid prediction for snap_scaffold_16-snap.2873-T1
Valid prediction for snap_scaffold_16-snap.2857-T1
Valid prediction for snap_scaffold_16-snap.2890-T1
Valid prediction for snap_scaffold_16-snap.2877-T1
Valid prediction for GlimmerHMM_glimmerT_39522-T1
Valid prediction for snap_scaffold_16-snap.2859-T1
Valid prediction for GlimmerHMM_glimmerT_39515-T1
Valid prediction for GlimmerHMM_glimmerT_39505-T1
Valid prediction for snap_scaffold_16-snap.2867-T1
Valid prediction for GlimmerHMM_glimmerT_39510-T1
Valid prediction for snap_scaffold_16-snap.2881-T1
Valid prediction for snap_scaffold_16-snap.2853-T1
Valid prediction for snap_scaffold_16-snap.2885-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_39504-T1
Valid prediction for snap_scaffold_16-snap.2884-T1
Valid prediction for snap_scaffold_16-snap.2880-T1
Valid prediction for GlimmerHMM_glimmerT_39521-T1
Valid prediction for GlimmerHMM_glimmerT_39519-T1
Valid prediction for snap_scaffold_16-snap.2855-T1
Valid prediction for GlimmerHMM_glimmerT_39506-T1
Valid prediction for snap_scaffold_16-snap.2875-T1
Valid prediction for GlimmerHMM_glimmerT_39514-T1
Valid prediction for GlimmerHMM_glimmerT_39517-T1
Valid prediction for snap_scaffold_16-snap.2889-T1
Valid prediction for GlimmerHMM_glimmerT_39503-T1
Valid prediction for snap_scaffold_16-snap.2888-T1
Valid prediction for Augustus_model.g26346.t1
Valid prediction for snap_scaffold_16-snap.2856-T1
Valid prediction for snap_scaffold_16-snap.2863-T1
Valid prediction for Augustus_model.g26348.t1
Valid prediction for snap_scaffold_16-snap.2879-T1
Valid prediction for GlimmerHMM_glimmerT_39511-T1
Valid prediction for snap_scaffold_16-snap.2872-T1
Valid prediction for snap_scaffold_16-snap.2868-T1
Valid prediction for snap_scaffold_16-snap.2862-T1
Valid prediction for GlimmerHMM_glimmerT_39509-T1
Valid prediction for GlimmerHMM_glimmerT_39502-T1
Valid prediction for GlimmerHMM_glimmerT_39524-T1
Valid prediction for snap_scaffold_16-snap.2891-T1
Valid prediction for GlimmerHMM_glimmerT_39513-T1
Valid prediction for snap_scaffold_16-snap.2882-T1
Valid prediction for snap_scaffold_16-snap.2874-T1
Valid prediction for snap_scaffold_16-snap.2892-T1
Valid prediction for GlimmerHMM_glimmerT_39508-T1
Valid prediction for snap_scaffold_16-snap.2865-T1
Valid prediction for snap_scaffold_16-snap.2852-T1
Valid prediction for GlimmerHMM_glimmerT_39526-T1
Valid prediction for GlimmerHMM_glimmerT_39525-T1
Valid prediction for snap_scaffold_16-snap.2878-T1
Valid prediction for snap_scaffold_16-snap.2858-T1
Valid prediction for GlimmerHMM_glimmerT_39518-T1
Valid prediction for snap_scaffold_16-snap.2854-T1
Valid prediction for GlimmerHMM_glimmerT_39507-T1
Valid prediction for snap_scaffold_16-snap.2866-T1
Valid prediction for snap_scaffold_16-snap.2886-T1
Valid prediction for GlimmerHMM_glimmerT_39516-T1
Valid prediction for snap_scaffold_16-snap.2860-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5490, rend_intergenic: 2691  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 6825, rend_intergenic: 6433  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24285, rend_intergenic: 24069  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29580, rend_intergenic: 24318  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38013, rend_intergenic: 36239  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42129, rend_intergenic: 38255  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49715, rend_intergenic: 42451  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51334, rend_intergenic: 50064  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61842, rend_intergenic: 51553  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63419, rend_intergenic: 61910  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72624, rend_intergenic: 66034  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88385, rend_intergenic: 86768  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98265, rend_intergenic: 90925  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100216, rend_intergenic: 98500  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123610, rend_intergenic: 122110  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128390, rend_intergenic: 126573  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130386, rend_intergenic: 128497  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141010, rend_intergenic: 130739  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153536, rend_intergenic: 150349  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170702, rend_intergenic: 159071  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 172920
-exon list size: 261


building trellis

0.4    
0.8    
1.1    
1.5    
1.9    
2.3    
2.7    
3.0    
3.4    
3.8    
4.2    
4.6    
4.9    
5.3    
5.7    
6.1    
6.5    
6.8    
7.2    
7.6    
8.0    
8.4    
8.7    
9.1    
9.5    
9.9    
10.3    
10.6    
11.0    
11.4    
11.8    
12.2    
12.5    
12.9    
13.3    
13.7    
14.1    
14.4    
14.8    
15.2    
15.6    
16.0    
16.3    
16.7    
17.1    
17.5    
17.9    
18.3    
18.6    
19.0    
19.4    
19.8    
20.2    
20.5    
20.9    
21.3    
21.7    
22.1    
22.4    
22.8    
23.2    
23.6    
24.0    
24.3    
24.7    
25.1    
25.5    
25.9    
26.2    
26.6    
27.0    
27.4    
27.8    
28.1    
28.5    
28.9    
29.3    
29.7    
30.0    
30.4    
30.8    
31.2    
31.6    
31.9    
32.3    
32.7    
33.1    
33.5    
33.8    
34.2    
34.6    
35.0    
35.4    
35.7    
36.1    
36.5    
36.9    
37.3    
37.6    
38.0    
38.4    
38.8    
39.2    
39.5    
39.9    
40.3    
40.7    
41.1    
41.4    
41.8    
42.2    
42.6    
43.0    
43.3    
43.7    
44.1    
44.5    
44.9    
45.2    
45.6    
46.0    
46.4    
46.8    
47.1    
47.5    
47.9    
48.3    
48.7    
49.0    
49.4    
49.8    
50.2    
50.6    
51.0    
51.3    
51.7    
52.1    
52.5    
52.9    
53.2    
53.6    
54.0    
54.4    
54.8    
55.1    
55.5    
55.9    
56.3    
56.7    
57.0    
57.4    
57.8    
58.2    
58.6    
58.9    
59.3    
59.7    
60.1    
60.5    
60.8    
61.2    
61.6    
62.0    
62.4    
62.7    
63.1    
63.5    
63.9    
64.3    
64.6    
65.0    
65.4    
65.8    
66.2    
66.5    
66.9    
67.3    
67.7    
68.1    
68.4    
68.8    
69.2    
69.6    
70.0    
70.3    
70.7    
71.1    
71.5    
71.9    
72.2    
72.6    
73.0    
73.4    
73.8    
74.1    
74.5    
74.9    
75.3    
75.7    
76.0    
76.4    
76.8    
77.2    
77.6    
77.9    
78.3    
78.7    
79.1    
79.5    
79.8    
80.2    
80.6    
81.0    
81.4    
81.7    
82.1    
82.5    
82.9    
83.3    
83.7    
84.0    
84.4    
84.8    
85.2    
85.6    
85.9    
86.3    
86.7    
87.1    
87.5    
87.8    
88.2    
88.6    
89.0    
89.4    
89.7    
90.1    
90.5    
90.9    
91.3    
91.6    
92.0    
92.4    
92.8    
93.2    
93.5    
93.9    
94.3    
94.7    
95.1    
95.4    
95.8    
96.2    
96.6    
97.0    
97.3    
97.7    
98.1    
98.5    
98.9    
99.2    
99.6    
-found 30 predictions from path traversal
Error with prediction: snap lend_intergenic: 5490, rend_intergenic: 2691  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 6825, rend_intergenic: 6433  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24285, rend_intergenic: 24069  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29580, rend_intergenic: 24318  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 38013, rend_intergenic: 36239  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42129, rend_intergenic: 38255  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 49715, rend_intergenic: 42451  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 51334, rend_intergenic: 50064  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61842, rend_intergenic: 51553  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 63419, rend_intergenic: 61910  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 72624, rend_intergenic: 66034  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88385, rend_intergenic: 86768  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98265, rend_intergenic: 90925  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100216, rend_intergenic: 98500  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 123610, rend_intergenic: 122110  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128390, rend_intergenic: 126573  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130386, rend_intergenic: 128497  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141010, rend_intergenic: 130739  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153536, rend_intergenic: 150349  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170702, rend_intergenic: 159071  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 12 predictions persist after filtering for low support