-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_16/scaffold_16_14486476-14673858 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_39445-T1 Valid prediction for Augustus_model.g26320.t1 Valid prediction for snap_scaffold_16-snap.2787-T1 Valid prediction for pasa_asmbl_16702.p1 Valid prediction for snap_scaffold_16-snap.2791-T1 Valid prediction for GlimmerHMM_glimmerT_39461-T1 Valid prediction for snap_scaffold_16-snap.2781-T1 Valid prediction for snap_scaffold_16-snap.2798-T1 Couldn't classify 140203, 140320 Couldn't classify 141495, 141586 Sorry, prediction pasa_asmbl_16693.p1 fails validation. (CCA) GC 140203-140320 GT GGG (CAA) AG 140509-140580 GT AGG (CCG) AG 140779-141414 GT GGG (GCC) AG 141495-141586 AT ATA -recovered pasa_asmbl_16693.p1, internal, 140509, 140580 -recovered pasa_asmbl_16693.p1, internal, 140779, 141414 Valid prediction for Augustus_model.g26317.t1 Valid prediction for snap_scaffold_16-snap.2767-T1 Valid prediction for snap_scaffold_16-snap.2785-T1 Valid prediction for snap_scaffold_16-snap.2759-T1 Valid prediction for GlimmerHMM_glimmerT_39462-T1 Valid prediction for snap_scaffold_16-snap.2778-T1 Valid prediction for pasa_asmbl_16696.p3 Valid prediction for snap_scaffold_16-snap.2757-T1 Sorry, intron length (4) is less than minimum required (10) Valid prediction for Augustus_model.g26318.t1 Valid prediction for CodingQuarry_transcript_20132-T1 Valid prediction for GlimmerHMM_glimmerT_39466-T1 Valid prediction for snap_scaffold_16-snap.2775-T1 Valid prediction for GlimmerHMM_glimmerT_39465-T1 Couldn't classify 165719, 166129 Sorry, prediction pasa_asmbl_16701.p1 fails validation. (GAC) GA 165719-166129 CC AAC Valid prediction for snap_scaffold_16-snap.2773-T1 Couldn't classify 163620, 163671 Couldn't classify 164626, 164762 Sorry, prediction pasa_asmbl_16700.p1 fails validation. (GCG) GG 163620-163671 GT AGG (CCC) AG 163813-164000 GT TGG (ATC) AG 164121-164283 GT GGG (GGA) AG 164626-164762 GG GAG -recovered pasa_asmbl_16700.p1, internal, 163813, 164000 -recovered pasa_asmbl_16700.p1, internal, 164121, 164283 Couldn't classify 114940, 114954 Sorry, prediction pasa_asmbl_16692.p1 fails validation. (GCT) CG 114940-114954 GT ACG (GAT) AG 115278-115337 GT AGG (CTG) AG 115495-115566 GT AGG (GGC) AG 115820-115957 GT CAG (GTT) AG 116070-116154 GT AGG (CCG) AG 116355-116407 GT AAG (CTC) AG 116538-116655 GT TGG (AGG) AG 116886-117060 GT AGG (GAA) AG 117662-117812 GT AGG (GAT) AG 117957-118020 GT GGG (CTT) AG 118183-118202 GA AGG add_exon() Sorry, pasa_asmbl_16692.p1 116070-116154-terminal-3 is invalid. -recovered pasa_asmbl_16692.p1, terminal, 116070, 116154 -recovered pasa_asmbl_16692.p1, terminal, 118183, 118202 -recovered pasa_asmbl_16692.p1, internal, 115278, 115337 -recovered pasa_asmbl_16692.p1, internal, 115495, 115566 -recovered pasa_asmbl_16692.p1, internal, 115820, 115957 -recovered pasa_asmbl_16692.p1, internal, 116070, 116154 -recovered pasa_asmbl_16692.p1, internal, 116355, 116407 -recovered pasa_asmbl_16692.p1, internal, 116538, 116655 -recovered pasa_asmbl_16692.p1, internal, 116886, 117060 -recovered pasa_asmbl_16692.p1, internal, 117662, 117812 -recovered pasa_asmbl_16692.p1, internal, 117957, 118020 Valid prediction for snap_scaffold_16-snap.2788-T1 Valid prediction for Augustus_model.g26323.t1 Valid prediction for HiQ_model.g26314.t1 Valid prediction for CodingQuarry_transcript_20135-T1 Valid prediction for snap_scaffold_16-snap.2799-T1 Valid prediction for snap_scaffold_16-snap.2795-T1 Valid prediction for GlimmerHMM_glimmerT_39471-T1 Valid prediction for CodingQuarry_transcript_20130-T1 Valid prediction for snap_scaffold_16-snap.2769-T1 Valid prediction for GlimmerHMM_glimmerT_39468-T1 Valid prediction for snap_scaffold_16-snap.2763-T1 Valid prediction for snap_scaffold_16-snap.2783-T1 Valid prediction for Augustus_model.g26299.t1 Valid prediction for snap_scaffold_16-snap.2790-T1 -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_16-snap.2761-T1 Valid prediction for GlimmerHMM_glimmerT_39455-T1 Valid prediction for snap_scaffold_16-snap.2784-T1 Valid prediction for GlimmerHMM_glimmerT_39454-T1 Valid prediction for GlimmerHMM_glimmerT_39451-T1 Valid prediction for Augustus_model.g26309.t1 Valid prediction for HiQ_model.g26308.t1 Couldn't classify 132490, 132666 Sorry, prediction pasa_asmbl_17458.p1 fails validation. (CTG) AG 132490-132666 GT AGG (GTC) AG 132745-132910 GT AGG (AGG) AG 132995-133119 GT AGG (GGC) AG 133209-133517 GT AGG (GAC) AG 133647-133850 GT AGG (AAC) AG 133935-134231 GT GGG (GTG) AG 134373-134477 GT AGG (ACT) AG 134585-134680 GT CTG (GAG) AG 134762-134896 GT AGG (AAA) AG 135034-135054 AG GAA -recovered pasa_asmbl_17458.p1, terminal, 135034, 135054 -recovered pasa_asmbl_17458.p1, internal, 132490, 132666 -recovered pasa_asmbl_17458.p1, internal, 132745, 132910 -recovered pasa_asmbl_17458.p1, internal, 132995, 133119 -recovered pasa_asmbl_17458.p1, internal, 133209, 133517 -recovered pasa_asmbl_17458.p1, internal, 133647, 133850 -recovered pasa_asmbl_17458.p1, internal, 133935, 134231 -recovered pasa_asmbl_17458.p1, internal, 134373, 134477 -recovered pasa_asmbl_17458.p1, internal, 134585, 134680 -recovered pasa_asmbl_17458.p1, internal, 134762, 134896 Valid prediction for snap_scaffold_16-snap.2770-T1 Valid prediction for pasa_asmbl_17447.p1 Valid prediction for HiQ_model.g26315.t1 Couldn't classify 174681, 174726 Couldn't classify 176585, 176650 Sorry, prediction pasa_asmbl_17442.p1 fails validation. (CTG) CT 174681-174726 GT AGG (AGG) AG 174811-174935 GT AGG (GGC) AG 175025-175333 GT AGG (GAC) AG 175463-175666 GT AGG (AAC) AG 175751-176047 GT GGG (GTG) AG 176188-176292 GT AGG (ACT) AG 176400-176495 GT CTG (GAG) AG 176585-176650 GA AGG -recovered pasa_asmbl_17442.p1, internal, 174811, 174935 -recovered pasa_asmbl_17442.p1, internal, 175025, 175333 -recovered pasa_asmbl_17442.p1, internal, 175463, 175666 -recovered pasa_asmbl_17442.p1, internal, 175751, 176047 -recovered pasa_asmbl_17442.p1, internal, 176188, 176292 -recovered pasa_asmbl_17442.p1, internal, 176400, 176495 Couldn't classify 174561, 174641 Sorry, prediction pasa_asmbl_17444.p1 fails validation. (ATG) AC 171849-171974 GT CTG (GAA) AG 172060-172302 GT AGG (GTT) AG 172379-172555 GT ATG (CTG) AG 172648-172793 GT AAG (GAA) AG 172875-172965 GT AGG (GCC) AG 173082-173471 GT AAG (ACA) AG 173565-173691 GT TGG (GTG) AG 173788-173906 GT AGG (GCA) AG 173986-174182 GT AAG (GAA) AG 174299-174482 GT AGG (GTC) AG 174561-174641 AC GCA -recovered pasa_asmbl_17444.p1, initial, 171849, 171974 -recovered pasa_asmbl_17444.p1, internal, 172060, 172302 -recovered pasa_asmbl_17444.p1, internal, 172379, 172555 -recovered pasa_asmbl_17444.p1, internal, 172648, 172793 -recovered pasa_asmbl_17444.p1, internal, 172875, 172965 -recovered pasa_asmbl_17444.p1, internal, 173082, 173471 -recovered pasa_asmbl_17444.p1, internal, 173565, 173691 -recovered pasa_asmbl_17444.p1, internal, 173788, 173906 -recovered pasa_asmbl_17444.p1, internal, 173986, 174182 -recovered pasa_asmbl_17444.p1, internal, 174299, 174482 Valid prediction for Augustus_model.g26303.t1 Valid prediction for GlimmerHMM_glimmerT_39457-T1 Couldn't classify 154981, 155076 Sorry, prediction pasa_asmbl_17453.p1 fails validation. (ATG) GA 154668-154868 GT AGG (ACT) AG 154981-155076 NN CTN -recovered pasa_asmbl_17453.p1, initial, 154668, 154868 Valid prediction for GlimmerHMM_glimmerT_39463-T1 Valid prediction for GlimmerHMM_glimmerT_39467-T1 Valid prediction for Augustus_model.g26305.t1 Valid prediction for Augustus_model.g26302.t1 Valid prediction for snap_scaffold_16-snap.2782-T1 Couldn't classify 51398, 52309 Sorry, prediction pasa_asmbl_17482.p1 fails validation. (ACA) CC 51398-52309 TT CCT Valid prediction for snap_scaffold_16-snap.2779-T1 Couldn't classify 52736, 54682 Sorry, prediction pasa_asmbl_17481.p1 fails validation. (GAC) CT 52736-54682 CC AAC Valid prediction for CodingQuarry_transcript_20129-T1 Valid prediction for Augustus_model.g26313.t1 Couldn't classify 99273, 99476 Couldn't classify 100335, 100367 Sorry, prediction pasa_asmbl_17470.p1 fails validation. (GAA) TG 99273-99476 GT AGG (GAC) AG 99606-99809 GT AGG (AAC) AG 99894-100190 GT GGG (GTG) AG 100335-100367 CA AGC -recovered pasa_asmbl_17470.p1, internal, 99606, 99809 -recovered pasa_asmbl_17470.p1, internal, 99894, 100190 Couldn't classify 17196, 17439 Couldn't classify 18295, 18555 Sorry, prediction pasa_asmbl_17487.p1 fails validation. (AAT) GA 17196-17439 GT AGG (CAC) AG 17708-17798 GT TGG (CAG) AG 17871-17934 GT TGG (ACC) AG 18295-18555 CA AAC -recovered pasa_asmbl_17487.p1, internal, 17708, 17798 -recovered pasa_asmbl_17487.p1, internal, 17871, 17934 Valid prediction for GlimmerHMM_glimmerT_39447-T1 Valid prediction for CodingQuarry_transcript_20131-T1 Valid prediction for snap_scaffold_16-snap.2768-T1 Valid prediction for Augustus_model.g26311.t1 Valid prediction for snap_scaffold_16-snap.2772-T1 Valid prediction for snap_scaffold_16-snap.2789-T1 Valid prediction for CodingQuarry_transcript_20133-T1 Valid prediction for GlimmerHMM_glimmerT_39459-T1 Valid prediction for Augustus_model.g26312.t1 Valid prediction for snap_scaffold_16-snap.2776-T1 Valid prediction for GlimmerHMM_glimmerT_39450-T1 Couldn't classify 109823, 109987 Couldn't classify 110176, 110361 Sorry, prediction pasa_asmbl_17586.p2 fails validation. (ACC) AC 109823-109987 GT AGG (CCC) AG 110176-110361 AA ACA Valid prediction for GlimmerHMM_glimmerT_39472-T1 Valid prediction for Augustus_model.g26300.t1 Valid prediction for Augustus_model.g26324.t1 Valid prediction for snap_scaffold_16-snap.2794-T1 Valid prediction for snap_scaffold_16-snap.2796-T1 Couldn't classify 107921, 107984 Couldn't classify 108879, 108973 Sorry, prediction pasa_asmbl_17468.p1 fails validation. (GGA) AG 107921-107984 GT TTG (ATC) AG 108132-108230 GT GGG (AGA) AG 108339-108442 GT ATG (GAA) AG 108534-108672 GT GGG (ATA) AG 108879-108973 AC TCA -recovered pasa_asmbl_17468.p1, internal, 107921, 107984 -recovered pasa_asmbl_17468.p1, internal, 108132, 108230 -recovered pasa_asmbl_17468.p1, internal, 108339, 108442 -recovered pasa_asmbl_17468.p1, internal, 108534, 108672 Valid prediction for HiQ_model.g26306.t1 Couldn't classify 55356, 55730 Sorry, prediction pasa_asmbl_17480.p1 fails validation. (ACC) AC 55356-55730 GG AAG Couldn't classify 95630, 95745 Couldn't classify 96486, 96662 Sorry, prediction pasa_asmbl_17557.p1 fails validation. (CTG) TG 95630-95745 GT AGG (GGA) AG 95826-96081 GT CTG (GAA) AG 96167-96409 GT AGG (GTT) AG 96486-96662 GT ATG -recovered pasa_asmbl_17557.p1, internal, 95826, 96081 -recovered pasa_asmbl_17557.p1, internal, 96167, 96409 -recovered pasa_asmbl_17557.p1, internal, 96486, 96662 Valid prediction for Augustus_model.g26310.t1 Couldn't classify 112722, 112751 Couldn't classify 113822, 113908 Sorry, prediction pasa_asmbl_17466.p1 fails validation. (CAG) CC 112722-112751 GT AGG (GCC) AG 112868-113257 GT AAG (ACA) AG 113351-113477 GT TGG (GTG) AG 113625-113743 GT AGG (GCA) AG 113822-113908 AA CCA -recovered pasa_asmbl_17466.p1, internal, 112868, 113257 -recovered pasa_asmbl_17466.p1, internal, 113351, 113477 -recovered pasa_asmbl_17466.p1, internal, 113625, 113743 Couldn't classify 155541, 155622 Couldn't classify 158724, 158828 Sorry, prediction pasa_asmbl_17451.p1 fails validation. (NNN) NN 155541-155622 GT GGG (ACA) AG 155869-155987 GT AGG (GTG) AG 156508-156657 GT ATG (TTC) AG 156742-156912 GT AGG (CCC) AG 157057-157369 GT TGG (CTG) AG 157464-157531 GT GGG (GAG) AG 157648-157853 GT AGG (ATA) AG 157946-158069 GT AGG (GTA) AG 158156-158292 GT AGG (GGA) AG 158373-158628 GT CTG (GAA) AG 158724-158828 GA ATG -recovered pasa_asmbl_17451.p1, internal, 155869, 155987 -recovered pasa_asmbl_17451.p1, internal, 156508, 156657 -recovered pasa_asmbl_17451.p1, internal, 156742, 156912 -recovered pasa_asmbl_17451.p1, internal, 157057, 157369 -recovered pasa_asmbl_17451.p1, internal, 157464, 157531 -recovered pasa_asmbl_17451.p1, internal, 157648, 157853 -recovered pasa_asmbl_17451.p1, internal, 157946, 158069 -recovered pasa_asmbl_17451.p1, internal, 158156, 158292 -recovered pasa_asmbl_17451.p1, internal, 158373, 158628 Valid prediction for pasa_asmbl_17489.p1 Couldn't classify 115635, 115886 Couldn't classify 117107, 117202 Sorry, prediction pasa_asmbl_17524.p1 fails validation. (TCC) CT 115635-115886 GT GGG (GTG) AG 116895-116999 GT AGG (ACT) AG 117107-117202 GT CTG -recovered pasa_asmbl_17524.p1, internal, 116895, 116999 -recovered pasa_asmbl_17524.p1, internal, 117107, 117202 Valid prediction for snap_scaffold_16-snap.2765-T1 Valid prediction for GlimmerHMM_glimmerT_39446-T1 Valid prediction for snap_scaffold_16-snap.2758-T1 Valid prediction for Augustus_model.g26316.t1 Valid prediction for GlimmerHMM_glimmerT_39470-T1 Valid prediction for GlimmerHMM_glimmerT_39453-T1 Couldn't classify 170456, 170663 Couldn't classify 170954, 171025 Sorry, prediction pasa_asmbl_17592.p1 fails validation. (GCC) CC 170456-170663 GT TGG (CCC) AG 170775-170851 GT GGG (GAG) AG 170954-171025 GA ACG -recovered pasa_asmbl_17592.p1, internal, 170775, 170851 Valid prediction for Augustus_model.g26321.t1 Valid prediction for snap_scaffold_16-snap.2777-T1 Valid prediction for GlimmerHMM_glimmerT_39464-T1 Valid prediction for snap_scaffold_16-snap.2766-T1 Valid prediction for GlimmerHMM_glimmerT_39449-T1 Valid prediction for snap_scaffold_16-snap.2797-T1 Valid prediction for snap_scaffold_16-snap.2793-T1 Couldn't classify 145775, 145919 Sorry, prediction pasa_asmbl_17455.p1 fails validation. (AAG) AG 145775-145919 GT AGG (AGG) AG 146004-146128 GT AGG (GGC) AG 146218-146526 GT AGG (GAC) AG 146656-146871 CG GAC -recovered pasa_asmbl_17455.p1, terminal, 146656, 146871 -recovered pasa_asmbl_17455.p1, internal, 145775, 145919 -recovered pasa_asmbl_17455.p1, internal, 146004, 146128 -recovered pasa_asmbl_17455.p1, internal, 146218, 146526 Couldn't classify 131228, 131392 Sorry, prediction pasa_asmbl_17459.p1 fails validation. (ATG) GA 123748-123948 GT AGG (ACT) AG 124061-124204 GT ACG (ACC) AG 124283-124439 GT AGG (ACA) AG 124532-124559 GT ACG (TGG) AG 124700-124805 GT AGG (GGT) AG 124889-124981 GT TCG (GGA) AG 125074-125137 GT TTG (ATC) AG 125285-125383 GT GGG (AGA) AG 125494-125597 GT ATG (GAA) AG 125687-125825 GT GGG (ATG) AG 125918-126036 GT AGG (GTT) AG 126195-126344 GT ATG (TTC) AG 126425-126595 GT AAG (CCC) AG 126677-126986 GT AGG (CCA) AG 127073-127149 GT GGG (GAG) AG 127252-127457 GT AGG (ATA) AG 127580-127703 GT AGG (GTG) AG 127786-127922 GT AGG (GGA) AG 128003-128258 GT CTG (GAA) AG 128336-128578 GT AGG (GTT) AG 128655-128831 GT ATG (CTG) AG 128924-129069 GT AAG (GAA) AG 131021-131111 GT AGG (GCC) AG 131228-131392 GA GAG -recovered pasa_asmbl_17459.p1, initial, 123748, 123948 add_exon() Sorry, pasa_asmbl_17459.p1 125918-126036-initial-1 is invalid. -recovered pasa_asmbl_17459.p1, initial, 125918, 126036 -recovered pasa_asmbl_17459.p1, internal, 124061, 124204 -recovered pasa_asmbl_17459.p1, internal, 124283, 124439 -recovered pasa_asmbl_17459.p1, internal, 124532, 124559 -recovered pasa_asmbl_17459.p1, internal, 124700, 124805 -recovered pasa_asmbl_17459.p1, internal, 124889, 124981 -recovered pasa_asmbl_17459.p1, internal, 125074, 125137 -recovered pasa_asmbl_17459.p1, internal, 125285, 125383 -recovered pasa_asmbl_17459.p1, internal, 125494, 125597 -recovered pasa_asmbl_17459.p1, internal, 125687, 125825 -recovered pasa_asmbl_17459.p1, internal, 125918, 126036 -recovered pasa_asmbl_17459.p1, internal, 126195, 126344 -recovered pasa_asmbl_17459.p1, internal, 126425, 126595 -recovered pasa_asmbl_17459.p1, internal, 126677, 126986 -recovered pasa_asmbl_17459.p1, internal, 127073, 127149 -recovered pasa_asmbl_17459.p1, internal, 127252, 127457 -recovered pasa_asmbl_17459.p1, internal, 127580, 127703 -recovered pasa_asmbl_17459.p1, internal, 127786, 127922 -recovered pasa_asmbl_17459.p1, internal, 128003, 128258 -recovered pasa_asmbl_17459.p1, internal, 128336, 128578 -recovered pasa_asmbl_17459.p1, internal, 128655, 128831 -recovered pasa_asmbl_17459.p1, internal, 128924, 129069 -recovered pasa_asmbl_17459.p1, internal, 131021, 131111 Valid prediction for snap_scaffold_16-snap.2780-T1 Couldn't classify 167779, 167922 Sorry, prediction pasa_asmbl_17445.p1 fails validation. (ATG) GA 167476-167676 GT AGG (ACT) AG 167779-167922 GT ACG -recovered pasa_asmbl_17445.p1, initial, 167476, 167676 -recovered pasa_asmbl_17445.p1, internal, 167779, 167922 Valid prediction for HiQ_model.g26319.t1 Valid prediction for pasa_asmbl_17474.p1 Valid prediction for snap_scaffold_16-snap.2801-T1 Couldn't classify 143307, 143384 Sorry, prediction pasa_asmbl_17457.p1 fails validation. (ATG) GA 138157-138357 GT AGG (ACA) AG 138492-138635 GT ACG (ACC) AG 138714-138870 GT AGG (ACA) AG 138964-138991 GT ACG (AGG) AG 139124-139229 GT AGG (GGT) AG 139319-139411 GT TCG (GGA) AG 139504-139567 GT TTG (ATC) AG 139715-139813 GT GGG (AGA) AG 139924-140027 GT ATG (GAA) AG 140117-140255 GT GGG (ATA) AG 140430-140548 GT AGG (GTG) AG 140730-140879 GT ATG (TTC) AG 140981-141151 GT AGG (CCC) AG 141293-141605 GT TGG (CTG) AG 141698-141762 GT GGG (GAG) AG 141881-142086 GT AGG (ATA) AG 142195-142318 GT AGG (GTA) AG 142405-142541 GT AGG (GGA) AG 142647-142902 GT CTG (GAA) AG 142988-143230 GT AGG (GTT) AG 143307-143384 GA AGG -recovered pasa_asmbl_17457.p1, initial, 138157, 138357 -recovered pasa_asmbl_17457.p1, internal, 138492, 138635 -recovered pasa_asmbl_17457.p1, internal, 138714, 138870 -recovered pasa_asmbl_17457.p1, internal, 138964, 138991 -recovered pasa_asmbl_17457.p1, internal, 139124, 139229 -recovered pasa_asmbl_17457.p1, internal, 139319, 139411 -recovered pasa_asmbl_17457.p1, internal, 139504, 139567 -recovered pasa_asmbl_17457.p1, internal, 139715, 139813 -recovered pasa_asmbl_17457.p1, internal, 139924, 140027 -recovered pasa_asmbl_17457.p1, internal, 140117, 140255 -recovered pasa_asmbl_17457.p1, internal, 140430, 140548 -recovered pasa_asmbl_17457.p1, internal, 140730, 140879 -recovered pasa_asmbl_17457.p1, internal, 140981, 141151 -recovered pasa_asmbl_17457.p1, internal, 141293, 141605 -recovered pasa_asmbl_17457.p1, internal, 141698, 141762 -recovered pasa_asmbl_17457.p1, internal, 141881, 142086 -recovered pasa_asmbl_17457.p1, internal, 142195, 142318 -recovered pasa_asmbl_17457.p1, internal, 142405, 142541 -recovered pasa_asmbl_17457.p1, internal, 142647, 142902 -recovered pasa_asmbl_17457.p1, internal, 142988, 143230 Couldn't classify 168052, 168157 Couldn't classify 168918, 168937 Sorry, prediction pasa_asmbl_17589.p1 fails validation. (GTG) CA 168052-168157 GT AGG (ACA) AG 168274-168301 GT ACG (TGG) AG 168378-168483 GT AGG (GGT) AG 168571-168663 GT TCG (GGA) AG 168756-168819 GT ATG (ACC) AG 168918-168937 GT GTG -recovered pasa_asmbl_17589.p1, internal, 168274, 168301 -recovered pasa_asmbl_17589.p1, internal, 168378, 168483 -recovered pasa_asmbl_17589.p1, internal, 168571, 168663 -recovered pasa_asmbl_17589.p1, internal, 168756, 168819 -recovered pasa_asmbl_17589.p1, internal, 168918, 168937 Couldn't classify 49530, 49610 Couldn't classify 50703, 50878 Sorry, prediction pasa_asmbl_17559.p1 fails validation. (CCA) AA 49530-49610 GT TAG (GCT) AG 50475-50526 GT AGG (ATA) AG 50703-50878 GA AGG -recovered pasa_asmbl_17559.p1, internal, 50475, 50526 Valid prediction for snap_scaffold_16-snap.2760-T1 Valid prediction for GlimmerHMM_glimmerT_39469-T1 Couldn't classify 169321, 169432 Couldn't classify 170039, 170143 Sorry, prediction pasa_asmbl_17590.p1 fails validation. (CAA) CT 169321-169432 GT GGG (ATG) AG 169529-169647 GT AGG (GTG) AG 169805-169954 GT ATG (TTC) AG 170039-170143 GG AAG add_exon() Sorry, pasa_asmbl_17590.p1 169529-169647-initial-1 is invalid. -recovered pasa_asmbl_17590.p1, initial, 169529, 169647 -recovered pasa_asmbl_17590.p1, internal, 169529, 169647 -recovered pasa_asmbl_17590.p1, internal, 169805, 169954 Valid prediction for HiQ_model.g26301.t1 Valid prediction for HiQ_model.g26322.t1 Valid prediction for GlimmerHMM_glimmerT_39452-T1 Valid prediction for snap_scaffold_16-snap.2800-T1 Sorry, intron length (3) is less than minimum required (10) Valid prediction for GlimmerHMM_glimmerT_39460-T1 Valid prediction for snap_scaffold_16-snap.2762-T1 Valid prediction for snap_scaffold_16-snap.2774-T1 Valid prediction for CodingQuarry_transcript_20134-T1 Valid prediction for snap_scaffold_16-snap.2771-T1 Valid prediction for Augustus_model.g26307.t1 Couldn't classify 66904, 67605 Sorry, prediction pasa_asmbl_17473.p1 fails validation. (CCC) CC 66904-67605 AG AGA Valid prediction for snap_scaffold_16-snap.2764-T1 Valid prediction for pasa_asmbl_17484.p1 Valid prediction for GlimmerHMM_glimmerT_39458-T1 Valid prediction for snap_scaffold_16-snap.2792-T1 Valid prediction for Augustus_model.g26304.t1 Valid prediction for GlimmerHMM_glimmerT_39456-T1 Valid prediction for snap_scaffold_16-snap.2786-T1 Valid prediction for GlimmerHMM_glimmerT_39448-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 13579, rend_intergenic: 11068 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 15683, rend_intergenic: 13886 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 45704, rend_intergenic: 40372 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 63636, rend_intergenic: 52883 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 75900, rend_intergenic: 71486 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 88963, rend_intergenic: 87142 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 90235, rend_intergenic: 89157 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 103821, rend_intergenic: 101064 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 121949, rend_intergenic: 120256 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 122299, rend_intergenic: 121989 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 125070, rend_intergenic: 122553 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 149812, rend_intergenic: 147507 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 151516, rend_intergenic: 150729 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 156188, rend_intergenic: 153117 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 162770, rend_intergenic: 160882 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 176624, rend_intergenic: 173219 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 181780, rend_intergenic: 178367 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 187383 -exon list size: 683 building trellis 0.1 0.3 0.4 0.6 0.7 0.9 1.0 1.2 1.3 1.5 1.6 1.8 1.9 2.0 2.2 2.3 2.5 2.6 2.8 2.9 3.1 3.2 3.4 3.5 3.6 3.8 3.9 4.1 4.2 4.4 4.5 4.7 4.8 5.0 5.1 5.3 5.4 5.5 5.7 5.8 6.0 6.1 6.3 6.4 6.6 6.7 6.9 7.0 7.2 7.3 7.4 7.6 7.7 7.9 8.0 8.2 8.3 8.5 8.6 8.8 8.9 9.1 9.2 9.3 9.5 9.6 9.8 9.9 10.1 10.2 10.4 10.5 10.7 10.8 10.9 11.1 11.2 11.4 11.5 11.7 11.8 12.0 12.1 12.3 12.4 12.6 12.7 12.8 13.0 13.1 13.3 13.4 13.6 13.7 13.9 14.0 14.2 14.3 14.5 14.6 14.7 14.9 15.0 15.2 15.3 15.5 15.6 15.8 15.9 16.1 16.2 16.4 16.5 16.6 16.8 16.9 17.1 17.2 17.4 17.5 17.7 17.8 18.0 18.1 18.2 18.4 18.5 18.7 18.8 19.0 19.1 19.3 19.4 19.6 19.7 19.9 20.0 20.1 20.3 20.4 20.6 20.7 20.9 21.0 21.2 21.3 21.5 21.6 21.8 21.9 22.0 22.2 22.3 22.5 22.6 22.8 22.9 23.1 23.2 23.4 23.5 23.6 23.8 23.9 24.1 24.2 24.4 24.5 24.7 24.8 25.0 25.1 25.3 25.4 25.5 25.7 25.8 26.0 26.1 26.3 26.4 26.6 26.7 26.9 27.0 27.2 27.3 27.4 27.6 27.7 27.9 28.0 28.2 28.3 28.5 28.6 28.8 28.9 29.1 29.2 29.3 29.5 29.6 29.8 29.9 30.1 30.2 30.4 30.5 30.7 30.8 30.9 31.1 31.2 31.4 31.5 31.7 31.8 32.0 32.1 32.3 32.4 32.6 32.7 32.8 33.0 33.1 33.3 33.4 33.6 33.7 33.9 34.0 34.2 34.3 34.5 34.6 34.7 34.9 35.0 35.2 35.3 35.5 35.6 35.8 35.9 36.1 36.2 36.4 36.5 36.6 36.8 36.9 37.1 37.2 37.4 37.5 37.7 37.8 38.0 38.1 38.2 38.4 38.5 38.7 38.8 39.0 39.1 39.3 39.4 39.6 39.7 39.9 40.0 40.1 40.3 40.4 40.6 40.7 40.9 41.0 41.2 41.3 41.5 41.6 41.8 41.9 42.0 42.2 42.3 42.5 42.6 42.8 42.9 43.1 43.2 43.4 43.5 43.6 43.8 43.9 44.1 44.2 44.4 44.5 44.7 44.8 45.0 45.1 45.3 45.4 45.5 45.7 45.8 46.0 46.1 46.3 46.4 46.6 46.7 46.9 47.0 47.2 47.3 47.4 47.6 47.7 47.9 48.0 48.2 48.3 48.5 48.6 48.8 48.9 49.1 49.2 49.3 49.5 49.6 49.8 49.9 50.1 50.2 50.4 50.5 50.7 50.8 50.9 51.1 51.2 51.4 51.5 51.7 51.8 52.0 52.1 52.3 52.4 52.6 52.7 52.8 53.0 53.1 53.3 53.4 53.6 53.7 53.9 54.0 54.2 54.3 54.5 54.6 54.7 54.9 55.0 55.2 55.3 55.5 55.6 55.8 55.9 56.1 56.2 56.4 56.5 56.6 56.8 56.9 57.1 57.2 57.4 57.5 57.7 57.8 58.0 58.1 58.2 58.4 58.5 58.7 58.8 59.0 59.1 59.3 59.4 59.6 59.7 59.9 60.0 60.1 60.3 60.4 60.6 60.7 60.9 61.0 61.2 61.3 61.5 61.6 61.8 61.9 62.0 62.2 62.3 62.5 62.6 62.8 62.9 63.1 63.2 63.4 63.5 63.6 63.8 63.9 64.1 64.2 64.4 64.5 64.7 64.8 65.0 65.1 65.3 65.4 65.5 65.7 65.8 66.0 66.1 66.3 66.4 66.6 66.7 66.9 67.0 67.2 67.3 67.4 67.6 67.7 67.9 68.0 68.2 68.3 68.5 68.6 68.8 68.9 69.1 69.2 69.3 69.5 69.6 69.8 69.9 70.1 70.2 70.4 70.5 70.7 70.8 70.9 71.1 71.2 71.4 71.5 71.7 71.8 72.0 72.1 72.3 72.4 72.6 72.7 72.8 73.0 73.1 73.3 73.4 73.6 73.7 73.9 74.0 74.2 74.3 74.5 74.6 74.7 74.9 75.0 75.2 75.3 75.5 75.6 75.8 75.9 76.1 76.2 76.4 76.5 76.6 76.8 76.9 77.1 77.2 77.4 77.5 77.7 77.8 78.0 78.1 78.2 78.4 78.5 78.7 78.8 79.0 79.1 79.3 79.4 79.6 79.7 79.9 80.0 80.1 80.3 80.4 80.6 80.7 80.9 81.0 81.2 81.3 81.5 81.6 81.8 81.9 82.0 82.2 82.3 82.5 82.6 82.8 82.9 83.1 83.2 83.4 83.5 83.6 83.8 83.9 84.1 84.2 84.4 84.5 84.7 84.8 85.0 85.1 85.3 85.4 85.5 85.7 85.8 86.0 86.1 86.3 86.4 86.6 86.7 86.9 87.0 87.2 87.3 87.4 87.6 87.7 87.9 88.0 88.2 88.3 88.5 88.6 88.8 88.9 89.1 89.2 89.3 89.5 89.6 89.8 89.9 90.1 90.2 90.4 90.5 90.7 90.8 90.9 91.1 91.2 91.4 91.5 91.7 91.8 92.0 92.1 92.3 92.4 92.6 92.7 92.8 93.0 93.1 93.3 93.4 93.6 93.7 93.9 94.0 94.2 94.3 94.5 94.6 94.7 94.9 95.0 95.2 95.3 95.5 95.6 95.8 95.9 96.1 96.2 96.4 96.5 96.6 96.8 96.9 97.1 97.2 97.4 97.5 97.7 97.8 98.0 98.1 98.2 98.4 98.5 98.7 98.8 99.0 99.1 99.3 99.4 99.6 99.7 99.9 -found 34 predictions from path traversal Error with prediction: snap lend_intergenic: 13579, rend_intergenic: 11068 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 15683, rend_intergenic: 13886 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 45704, rend_intergenic: 40372 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 63636, rend_intergenic: 52883 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 75900, rend_intergenic: 71486 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 88963, rend_intergenic: 87142 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 90235, rend_intergenic: 89157 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 103821, rend_intergenic: 101064 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 121949, rend_intergenic: 120256 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 122299, rend_intergenic: 121989 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 125070, rend_intergenic: 122553 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 149812, rend_intergenic: 147507 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 151516, rend_intergenic: 150729 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 156188, rend_intergenic: 153117 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 162770, rend_intergenic: 160882 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 176624, rend_intergenic: 173219 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 181780, rend_intergenic: 178367 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -reporting highest scoring path thru the trellis. -found 31 predictions persist after filtering for low support