-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_16/scaffold_16_14198263-14495605

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for pasa_asmbl_16681.p1
Valid prediction for snap_scaffold_16-snap.2732-T1
Valid prediction for snap_scaffold_16-snap.2715-T1
Couldn't classify 269278, 269862
Sorry, prediction pasa_asmbl_16680.p1 fails validation.
(AGT)	 TC	269278-269862	GG	AAG
Valid prediction for GlimmerHMM_glimmerT_39437-T1
Valid prediction for snap_scaffold_16-snap.2738-T1
Valid prediction for snap_scaffold_16-snap.2713-T1
Valid prediction for GlimmerHMM_glimmerT_39421-T1
Valid prediction for GlimmerHMM_glimmerT_39436-T1
Valid prediction for snap_scaffold_16-snap.2742-T1
Valid prediction for GlimmerHMM_glimmerT_39425-T1
Valid prediction for GlimmerHMM_glimmerT_39433-T1
Valid prediction for Augustus_model.g26290.t1
Valid prediction for GlimmerHMM_glimmerT_39445-T1
Valid prediction for Augustus_model.g26296.t1
Valid prediction for snap_scaffold_16-snap.2709-T1
Valid prediction for snap_scaffold_16-snap.2757-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for Augustus_model.g26289.t1
Valid prediction for snap_scaffold_16-snap.2712-T1
Valid prediction for snap_scaffold_16-snap.2748-T1
Valid prediction for Augustus_model.g26291.t1
Valid prediction for GlimmerHMM_glimmerT_39444-T1
Valid prediction for GlimmerHMM_glimmerT_39430-T1
Valid prediction for snap_scaffold_16-snap.2736-T1
Valid prediction for Augustus_model.g26299.t1
Couldn't classify 22695, 23066
Sorry, prediction pasa_asmbl_17441.p1 fails validation.
(TCG)	 CC	22695-23066	TC	TCT
Valid prediction for GlimmerHMM_glimmerT_39439-T1
Valid prediction for snap_scaffold_16-snap.2754-T1
Valid prediction for Augustus_model.g26286.t1
Valid prediction for snap_scaffold_16-snap.2718-T1
Valid prediction for snap_scaffold_16-snap.2749-T1
Couldn't classify 265979, 266090
Couldn't classify 268514, 269109
Sorry, prediction pasa_asmbl_16679.p1 fails validation.
(GGT)	 CA	265979-266090	GT	TGG
(ATT)	 AG	266617-266796	GT	AGG
(GTG)	 AG	268514-269109	CC	CCC
-recovered pasa_asmbl_16679.p1, internal, 266617, 266796
Valid prediction for snap_scaffold_16-snap.2739-T1
Valid prediction for GlimmerHMM_glimmerT_39440-T1
Valid prediction for GlimmerHMM_glimmerT_39442-T1
Valid prediction for Augustus_model.g26293.t1
Valid prediction for GlimmerHMM_glimmerT_39427-T1
Valid prediction for snap_scaffold_16-snap.2744-T1
Valid prediction for Augustus_model.g26295.t1
Valid prediction for snap_scaffold_16-snap.2716-T1
Valid prediction for snap_scaffold_16-snap.2725-T1
Valid prediction for snap_scaffold_16-snap.2710-T1
Valid prediction for snap_scaffold_16-snap.2743-T1
Valid prediction for Augustus_model.g26288.t1
Valid prediction for HiQ_model.g26298.t1
Valid prediction for Augustus_model.g26297.t1
Valid prediction for snap_scaffold_16-snap.2740-T1
Sorry, intron length (7) is less than minimum required (10)

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_16-snap.2735-T1
Valid prediction for GlimmerHMM_glimmerT_39438-T1
Valid prediction for Augustus_model.g26294.t1
Valid prediction for snap_scaffold_16-snap.2747-T1
Valid prediction for snap_scaffold_16-snap.2750-T1
Valid prediction for snap_scaffold_16-snap.2729-T1
Valid prediction for snap_scaffold_16-snap.2734-T1
Valid prediction for snap_scaffold_16-snap.2719-T1
Valid prediction for snap_scaffold_16-snap.2714-T1
Valid prediction for GlimmerHMM_glimmerT_39435-T1
Valid prediction for GlimmerHMM_glimmerT_39420-T1
Valid prediction for snap_scaffold_16-snap.2721-T1
Valid prediction for snap_scaffold_16-snap.2733-T1
Valid prediction for Augustus_model.g26292.t1
Valid prediction for GlimmerHMM_glimmerT_39441-T1
Valid prediction for snap_scaffold_16-snap.2741-T1
Valid prediction for snap_scaffold_16-snap.2727-T1
Valid prediction for Augustus_model.g26287.t1
Valid prediction for snap_scaffold_16-snap.2723-T1
Valid prediction for Augustus_model.g26285.t1
Valid prediction for snap_scaffold_16-snap.2728-T1
Valid prediction for snap_scaffold_16-snap.2720-T1
Valid prediction for GlimmerHMM_glimmerT_39429-T1
Valid prediction for snap_scaffold_16-snap.2726-T1
Valid prediction for GlimmerHMM_glimmerT_39428-T1
Valid prediction for snap_scaffold_16-snap.2753-T1
Valid prediction for snap_scaffold_16-snap.2737-T1
Valid prediction for snap_scaffold_16-snap.2756-T1
Valid prediction for GlimmerHMM_glimmerT_39426-T1
Valid prediction for GlimmerHMM_glimmerT_39431-T1
Valid prediction for snap_scaffold_16-snap.2730-T1
Valid prediction for GlimmerHMM_glimmerT_39424-T1
Valid prediction for GlimmerHMM_glimmerT_39443-T1
Valid prediction for snap_scaffold_16-snap.2724-T1
Valid prediction for GlimmerHMM_glimmerT_39432-T1
Valid prediction for GlimmerHMM_glimmerT_39422-T1
Valid prediction for snap_scaffold_16-snap.2722-T1
Valid prediction for snap_scaffold_16-snap.2752-T1
Valid prediction for snap_scaffold_16-snap.2751-T1
Valid prediction for snap_scaffold_16-snap.2731-T1
Valid prediction for snap_scaffold_16-snap.2717-T1
Valid prediction for snap_scaffold_16-snap.2711-T1
Valid prediction for snap_scaffold_16-snap.2745-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_39423-T1
Valid prediction for snap_scaffold_16-snap.2755-T1
Valid prediction for GlimmerHMM_glimmerT_39434-T1
Valid prediction for snap_scaffold_16-snap.2746-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 22756, rend_intergenic: 9650  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26100, rend_intergenic: 23006  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30165, rend_intergenic: 26276  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88776, rend_intergenic: 45815  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90098, rend_intergenic: 89161  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128903, rend_intergenic: 90277  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175985, rend_intergenic: 139189  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179326, rend_intergenic: 176291  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187697, rend_intergenic: 179378  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 223968, rend_intergenic: 188612  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 229502, rend_intergenic: 224558  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 237451, rend_intergenic: 230271  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 259076, rend_intergenic: 245518  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 281149, rend_intergenic: 262510  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 282895, rend_intergenic: 281778  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 292477, rend_intergenic: 284271  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 297343
-exon list size: 598


building trellis

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25.8    
26.0    
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26.7    
26.8    
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27.8    
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29.8    
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57.3    
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58.8    
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59.2    
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61.0    
61.2    
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63.2    
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63.7    
63.8    
64.0    
64.2    
64.3    
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64.7    
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65.2    
65.3    
65.5    
65.7    
65.8    
66.0    
66.2    
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67.2    
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68.0    
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68.8    
69.0    
69.2    
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69.5    
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71.0    
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72.2    
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72.8    
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75.8    
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77.0    
77.2    
77.3    
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77.7    
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78.0    
78.2    
78.3    
78.5    
78.7    
78.8    
79.0    
79.2    
79.3    
79.5    
79.7    
79.8    
80.0    
80.2    
80.3    
80.5    
80.7    
80.8    
81.0    
81.2    
81.3    
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81.8    
82.0    
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82.7    
82.8    
83.0    
83.2    
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83.5    
83.7    
83.8    
84.0    
84.2    
84.3    
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84.7    
84.8    
85.0    
85.2    
85.3    
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85.7    
85.8    
86.0    
86.2    
86.3    
86.5    
86.7    
86.8    
87.0    
87.2    
87.3    
87.5    
87.7    
87.8    
88.0    
88.2    
88.3    
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88.7    
88.8    
89.0    
89.2    
89.3    
89.5    
89.7    
89.8    
90.0    
90.2    
90.3    
90.5    
90.7    
90.8    
91.0    
91.2    
91.3    
91.5    
91.7    
91.8    
92.0    
92.2    
92.3    
92.5    
92.7    
92.8    
93.0    
93.2    
93.3    
93.5    
93.7    
93.8    
94.0    
94.2    
94.3    
94.5    
94.7    
94.8    
95.0    
95.2    
95.3    
95.5    
95.7    
95.8    
96.0    
96.2    
96.3    
96.5    
96.7    
96.8    
97.0    
97.2    
97.3    
97.5    
97.7    
97.8    
98.0    
98.2    
98.3    
98.5    
98.7    
98.8    
99.0    
99.2    
99.3    
99.5    
99.7    
99.8    
-found 32 predictions from path traversal
Error with prediction: snap lend_intergenic: 22756, rend_intergenic: 9650  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26100, rend_intergenic: 23006  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 30165, rend_intergenic: 26276  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 88776, rend_intergenic: 45815  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 90098, rend_intergenic: 89161  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128903, rend_intergenic: 90277  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175985, rend_intergenic: 139189  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 179326, rend_intergenic: 176291  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187697, rend_intergenic: 179378  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 223968, rend_intergenic: 188612  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 229502, rend_intergenic: 224558  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 237451, rend_intergenic: 230271  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 259076, rend_intergenic: 245518  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 281149, rend_intergenic: 262510  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 282895, rend_intergenic: 281778  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 292477, rend_intergenic: 284271  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 16 predictions persist after filtering for low support