-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_16/scaffold_16_13792069-13955037

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_39387-T1
Valid prediction for snap_scaffold_16-snap.2639-T1
Valid prediction for GlimmerHMM_glimmerT_39376-T1
Valid prediction for snap_scaffold_16-snap.2660-T1
Valid prediction for GlimmerHMM_glimmerT_39386-T1
Valid prediction for GlimmerHMM_glimmerT_39369-T1
Valid prediction for GlimmerHMM_glimmerT_39378-T1
Valid prediction for GlimmerHMM_glimmerT_39384-T1
Valid prediction for snap_scaffold_16-snap.2629-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for Augustus_model.g26261.t1
Valid prediction for snap_scaffold_16-snap.2631-T1
Valid prediction for snap_scaffold_16-snap.2633-T1
Valid prediction for snap_scaffold_16-snap.2651-T1
Valid prediction for GlimmerHMM_glimmerT_39388-T1
Valid prediction for GlimmerHMM_glimmerT_39373-T1
Valid prediction for Augustus_model.g26266.t1
Valid prediction for snap_scaffold_16-snap.2644-T1
Valid prediction for snap_scaffold_16-snap.2642-T1
Valid prediction for snap_scaffold_16-snap.2646-T1
Valid prediction for snap_scaffold_16-snap.2635-T1
Valid prediction for snap_scaffold_16-snap.2648-T1
Valid prediction for GlimmerHMM_glimmerT_39368-T1
Valid prediction for GlimmerHMM_glimmerT_39380-T1
Valid prediction for GlimmerHMM_glimmerT_39375-T1
Valid prediction for snap_scaffold_16-snap.2637-T1
Valid prediction for snap_scaffold_16-snap.2652-T1
Valid prediction for snap_scaffold_16-snap.2655-T1
Valid prediction for snap_scaffold_16-snap.2647-T1
Valid prediction for snap_scaffold_16-snap.2656-T1
Valid prediction for snap_scaffold_16-snap.2630-T1
Valid prediction for snap_scaffold_16-snap.2650-T1
Valid prediction for snap_scaffold_16-snap.2638-T1
Valid prediction for pasa_asmbl_16661.p1
Valid prediction for GlimmerHMM_glimmerT_39374-T1
Valid prediction for snap_scaffold_16-snap.2624-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_39390-T1
Valid prediction for HiQ_model.g26269.t1
Valid prediction for HiQ_model.g26268.t1
Valid prediction for GlimmerHMM_glimmerT_39381-T1
Valid prediction for GlimmerHMM_glimmerT_39391-T1
Valid prediction for snap_scaffold_16-snap.2634-T1
Valid prediction for Augustus_model.g26267.t1
Valid prediction for Augustus_model.g26264.t1
Valid prediction for GlimmerHMM_glimmerT_39385-T1
Valid prediction for CodingQuarry_transcript_20121-T1
Valid prediction for snap_scaffold_16-snap.2636-T1
Valid prediction for GlimmerHMM_glimmerT_39392-T1
Valid prediction for pasa_asmbl_17417.p1
Valid prediction for snap_scaffold_16-snap.2643-T1
Valid prediction for snap_scaffold_16-snap.2662-T1
Valid prediction for CodingQuarry_transcript_20120-T1
Valid prediction for CodingQuarry_transcript_20122-T1
Valid prediction for GlimmerHMM_glimmerT_39371-T1
Valid prediction for snap_scaffold_16-snap.2641-T1
Valid prediction for Augustus_model.g26259.t1
Valid prediction for HiQ_model.g26263.t1
Valid prediction for snap_scaffold_16-snap.2645-T1
Valid prediction for pasa_asmbl_17515.p1
Valid prediction for snap_scaffold_16-snap.2654-T1
Valid prediction for Augustus_model.g26265.t1
Valid prediction for pasa_asmbl_17418.p1
Valid prediction for snap_scaffold_16-snap.2649-T1
Valid prediction for snap_scaffold_16-snap.2659-T1
Valid prediction for HiQ_model.g26262.t1
Valid prediction for snap_scaffold_16-snap.2653-T1
Valid prediction for GlimmerHMM_glimmerT_39370-T1
Valid prediction for Augustus_model.g26260.t1
Valid prediction for CodingQuarry_transcript_20123-T1
Valid prediction for snap_scaffold_16-snap.2657-T1
Valid prediction for snap_scaffold_16-snap.2661-T1
Valid prediction for GlimmerHMM_glimmerT_39379-T1
Valid prediction for GlimmerHMM_glimmerT_39382-T1
Valid prediction for snap_scaffold_16-snap.2625-T1
Valid prediction for GlimmerHMM_glimmerT_39377-T1
Valid prediction for GlimmerHMM_glimmerT_39389-T1
Valid prediction for GlimmerHMM_glimmerT_39383-T1
Valid prediction for GlimmerHMM_glimmerT_39372-T1
Valid prediction for snap_scaffold_16-snap.2628-T1
Valid prediction for snap_scaffold_16-snap.2627-T1
Valid prediction for snap_scaffold_16-snap.2658-T1
Valid prediction for snap_scaffold_16-snap.2632-T1
Valid prediction for snap_scaffold_16-snap.2640-T1
Valid prediction for snap_scaffold_16-snap.2626-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6950, rend_intergenic: 4033  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20821, rend_intergenic: 16036  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45795, rend_intergenic: 32907  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67943, rend_intergenic: 55749  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71268, rend_intergenic: 69619  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73689, rend_intergenic: 72046  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76394, rend_intergenic: 74492  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91651, rend_intergenic: 78215  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95352, rend_intergenic: 93409  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105437, rend_intergenic: 95754  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128579, rend_intergenic: 113114  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129905, rend_intergenic: 129027  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140145, rend_intergenic: 135550  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146885, rend_intergenic: 144562  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148421, rend_intergenic: 147474  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 162969
-exon list size: 294


building trellis

0.3    
0.7    
1.0    
1.4    
1.7    
2.0    
2.4    
2.7    
3.0    
3.4    
3.7    
4.1    
4.4    
4.7    
5.1    
5.4    
5.7    
6.1    
6.4    
6.8    
7.1    
7.4    
7.8    
8.1    
8.4    
8.8    
9.1    
9.5    
9.8    
10.1    
10.5    
10.8    
11.1    
11.5    
11.8    
12.2    
12.5    
12.8    
13.2    
13.5    
13.9    
14.2    
14.5    
14.9    
15.2    
15.5    
15.9    
16.2    
16.6    
16.9    
17.2    
17.6    
17.9    
18.2    
18.6    
18.9    
19.3    
19.6    
19.9    
20.3    
20.6    
20.9    
21.3    
21.6    
22.0    
22.3    
22.6    
23.0    
23.3    
23.6    
24.0    
24.3    
24.7    
25.0    
25.3    
25.7    
26.0    
26.4    
26.7    
27.0    
27.4    
27.7    
28.0    
28.4    
28.7    
29.1    
29.4    
29.7    
30.1    
30.4    
30.7    
31.1    
31.4    
31.8    
32.1    
32.4    
32.8    
33.1    
33.4    
33.8    
34.1    
34.5    
34.8    
35.1    
35.5    
35.8    
36.1    
36.5    
36.8    
37.2    
37.5    
37.8    
38.2    
38.5    
38.9    
39.2    
39.5    
39.9    
40.2    
40.5    
40.9    
41.2    
41.6    
41.9    
42.2    
42.6    
42.9    
43.2    
43.6    
43.9    
44.3    
44.6    
44.9    
45.3    
45.6    
45.9    
46.3    
46.6    
47.0    
47.3    
47.6    
48.0    
48.3    
48.6    
49.0    
49.3    
49.7    
50.0    
50.3    
50.7    
51.0    
51.4    
51.7    
52.0    
52.4    
52.7    
53.0    
53.4    
53.7    
54.1    
54.4    
54.7    
55.1    
55.4    
55.7    
56.1    
56.4    
56.8    
57.1    
57.4    
57.8    
58.1    
58.4    
58.8    
59.1    
59.5    
59.8    
60.1    
60.5    
60.8    
61.1    
61.5    
61.8    
62.2    
62.5    
62.8    
63.2    
63.5    
63.9    
64.2    
64.5    
64.9    
65.2    
65.5    
65.9    
66.2    
66.6    
66.9    
67.2    
67.6    
67.9    
68.2    
68.6    
68.9    
69.3    
69.6    
69.9    
70.3    
70.6    
70.9    
71.3    
71.6    
72.0    
72.3    
72.6    
73.0    
73.3    
73.6    
74.0    
74.3    
74.7    
75.0    
75.3    
75.7    
76.0    
76.4    
76.7    
77.0    
77.4    
77.7    
78.0    
78.4    
78.7    
79.1    
79.4    
79.7    
80.1    
80.4    
80.7    
81.1    
81.4    
81.8    
82.1    
82.4    
82.8    
83.1    
83.4    
83.8    
84.1    
84.5    
84.8    
85.1    
85.5    
85.8    
86.1    
86.5    
86.8    
87.2    
87.5    
87.8    
88.2    
88.5    
88.9    
89.2    
89.5    
89.9    
90.2    
90.5    
90.9    
91.2    
91.6    
91.9    
92.2    
92.6    
92.9    
93.2    
93.6    
93.9    
94.3    
94.6    
94.9    
95.3    
95.6    
95.9    
96.3    
96.6    
97.0    
97.3    
97.6    
98.0    
98.3    
98.6    
99.0    
99.3    
99.7    
-found 25 predictions from path traversal
Error with prediction: snap lend_intergenic: 6950, rend_intergenic: 4033  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20821, rend_intergenic: 16036  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 45795, rend_intergenic: 32907  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67943, rend_intergenic: 55749  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71268, rend_intergenic: 69619  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 73689, rend_intergenic: 72046  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 76394, rend_intergenic: 74492  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91651, rend_intergenic: 78215  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95352, rend_intergenic: 93409  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 105437, rend_intergenic: 95754  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 128579, rend_intergenic: 113114  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129905, rend_intergenic: 129027  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140145, rend_intergenic: 135550  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146885, rend_intergenic: 144562  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148421, rend_intergenic: 147474  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 15 predictions persist after filtering for low support