-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_16/scaffold_16_1365842-1720823

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g25227.t1
Valid prediction for snap_scaffold_16-snap.238-T1
Valid prediction for GlimmerHMM_glimmerT_37812-T1
Valid prediction for Augustus_model.g25226.t1
Valid prediction for GlimmerHMM_glimmerT_37818-T1
Valid prediction for CodingQuarry_transcript_19900-T1
Valid prediction for snap_scaffold_16-snap.242-T1
Valid prediction for Augustus_model.g25217.t1
Valid prediction for snap_scaffold_16-snap.235-T1
Valid prediction for Augustus_model.g25228.t1
Couldn't classify 111844, 112005
Sorry, prediction pasa_asmbl_16080.p2 fails validation.
(CTG)	 AG	111844-112005	GT	AGG
(ATT)	 AG	112568-112729	GT	TCG
(GAT)	 AG	112936-112971	TG	AGT
-recovered pasa_asmbl_16080.p2, terminal, 112936, 112971
-recovered pasa_asmbl_16080.p2, internal, 111844, 112005
-recovered pasa_asmbl_16080.p2, internal, 112568, 112729
Valid prediction for snap_scaffold_16-snap.217-T1
Valid prediction for Augustus_model.g25229.t1
Valid prediction for GlimmerHMM_glimmerT_37825-T1
Valid prediction for snap_scaffold_16-snap.241-T1
Valid prediction for snap_scaffold_16-snap.226-T1
Valid prediction for HiQ_model.g25218.t1
Valid prediction for GlimmerHMM_glimmerT_37832-T1
Valid prediction for GlimmerHMM_glimmerT_37815-T1
Valid prediction for GlimmerHMM_glimmerT_37814-T1
Valid prediction for Augustus_model.g25220.t1
Valid prediction for snap_scaffold_16-snap.221-T1
Valid prediction for snap_scaffold_16-snap.232-T1
Valid prediction for snap_scaffold_16-snap.239-T1
Valid prediction for HiQ_model.g25216.t1
Valid prediction for snap_scaffold_16-snap.213-T1
Valid prediction for GlimmerHMM_glimmerT_37811-T1
Couldn't classify 128595, 128654
Couldn't classify 143189, 143330
Sorry, prediction pasa_asmbl_16081.p1 fails validation.
(GAG)	 AA	128595-128654	GT	AGG
(GTG)	 AG	129204-129340	GT	AGG
(CTA)	 AG	131929-132092	GT	AGG
(GCA)	 AG	134095-134207	GT	GGG
(AAT)	 AG	134430-134493	GT	CGG
(ATG)	 AG	134831-134928	GT	AAG
(ATT)	 AG	137617-137718	GT	AAG
(GAA)	 AG	139872-139997	GT	ATG
(GAA)	 AG	140260-140381	GT	ATG
(GGA)	 AG	141542-141646	GT	AGG
(GAA)	 AG	142568-142693	GT	GTG
(TGG)	 AG	143189-143330	GT	TGG
-recovered pasa_asmbl_16081.p1, initial, 134831, 134928
-recovered pasa_asmbl_16081.p1, internal, 129204, 129340
-recovered pasa_asmbl_16081.p1, internal, 131929, 132092
-recovered pasa_asmbl_16081.p1, internal, 134095, 134207
-recovered pasa_asmbl_16081.p1, internal, 134430, 134493
-recovered pasa_asmbl_16081.p1, internal, 134831, 134928
-recovered pasa_asmbl_16081.p1, internal, 137617, 137718
-recovered pasa_asmbl_16081.p1, internal, 139872, 139997
-recovered pasa_asmbl_16081.p1, internal, 140260, 140381
-recovered pasa_asmbl_16081.p1, internal, 141542, 141646
-recovered pasa_asmbl_16081.p1, internal, 142568, 142693
-recovered pasa_asmbl_16081.p1, internal, 143189, 143330
Valid prediction for GlimmerHMM_glimmerT_37827-T1
Valid prediction for GlimmerHMM_glimmerT_37809-T1
Couldn't classify 111155, 111333
Sorry, prediction pasa_asmbl_16077.p1 fails validation.
(ATG)	 CA	109824-109897	GT	TGG
(GTA)	 AG	110579-110672	GT	AAG
(GTC)	 AG	110773-110815	GT	AGG
(CCC)	 AG	111155-111333	CT	CCC
-recovered pasa_asmbl_16077.p1, initial, 109824, 109897
-recovered pasa_asmbl_16077.p1, internal, 110579, 110672
-recovered pasa_asmbl_16077.p1, internal, 110773, 110815
Valid prediction for GlimmerHMM_glimmerT_37830-T1
Valid prediction for CodingQuarry_transcript_19901-T1
Valid prediction for snap_scaffold_16-snap.212-T1
Valid prediction for pasa_asmbl_16084.p1
Valid prediction for snap_scaffold_16-snap.223-T1
Valid prediction for pasa_asmbl_16075.p1
Valid prediction for GlimmerHMM_glimmerT_37820-T1
Valid prediction for snap_scaffold_16-snap.219-T1
Valid prediction for snap_scaffold_16-snap.215-T1
Valid prediction for GlimmerHMM_glimmerT_37831-T1
Valid prediction for snap_scaffold_16-snap.237-T1
Valid prediction for snap_scaffold_16-snap.230-T1
Valid prediction for snap_scaffold_16-snap.218-T1
Valid prediction for snap_scaffold_16-snap.222-T1
Valid prediction for snap_scaffold_16-snap.240-T1
Valid prediction for snap_scaffold_16-snap.220-T1
Valid prediction for GlimmerHMM_glimmerT_37813-T1
Valid prediction for GlimmerHMM_glimmerT_37817-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g25225.t1
Valid prediction for snap_scaffold_16-snap.231-T1
Valid prediction for GlimmerHMM_glimmerT_37823-T1
Valid prediction for HiQ_model.g25215.t1
Valid prediction for snap_scaffold_16-snap.229-T1
Valid prediction for snap_scaffold_16-snap.225-T1
Valid prediction for GlimmerHMM_glimmerT_37816-T1
Valid prediction for Augustus_model.g25224.t1
Valid prediction for snap_scaffold_16-snap.228-T1
Valid prediction for snap_scaffold_16-snap.236-T1
Valid prediction for snap_scaffold_16-snap.216-T1
Valid prediction for Augustus_model.g25223.t1
Valid prediction for GlimmerHMM_glimmerT_37821-T1
Valid prediction for snap_scaffold_16-snap.227-T1
Valid prediction for GlimmerHMM_glimmerT_37828-T1
Valid prediction for Augustus_model.g25222.t1
Valid prediction for snap_scaffold_16-snap.214-T1
Valid prediction for CodingQuarry_transcript_19899-T1
Valid prediction for GlimmerHMM_glimmerT_37819-T1
Valid prediction for snap_scaffold_16-snap.211-T1
Valid prediction for GlimmerHMM_glimmerT_37826-T1
Valid prediction for Augustus_model.g25221.t1
Valid prediction for snap_scaffold_16-snap.234-T1
Valid prediction for GlimmerHMM_glimmerT_37829-T1
Valid prediction for snap_scaffold_16-snap.233-T1
Valid prediction for snap_scaffold_16-snap.224-T1
Valid prediction for Augustus_model.g25219.t1
Valid prediction for GlimmerHMM_glimmerT_37824-T1
Valid prediction for GlimmerHMM_glimmerT_37810-T1
Valid prediction for GlimmerHMM_glimmerT_37822-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 305775, rend_intergenic: 301845  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 317635, rend_intergenic: 310454  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 354982
-exon list size: 217


building trellis

0.5    
0.9    
1.4    
1.8    
2.3    
2.7    
3.2    
3.7    
4.1    
4.6    
5.0    
5.5    
5.9    
6.4    
6.8    
7.3    
7.8    
8.2    
8.7    
9.1    
9.6    
10.0    
10.5    
11.0    
11.4    
11.9    
12.3    
12.8    
13.2    
13.7    
14.2    
14.6    
15.1    
15.5    
16.0    
16.4    
16.9    
17.4    
17.8    
18.3    
18.7    
19.2    
19.6    
20.1    
20.5    
21.0    
21.5    
21.9    
22.4    
22.8    
23.3    
23.7    
24.2    
24.7    
25.1    
25.6    
26.0    
26.5    
26.9    
27.4    
27.9    
28.3    
28.8    
29.2    
29.7    
30.1    
30.6    
31.1    
31.5    
32.0    
32.4    
32.9    
33.3    
33.8    
34.2    
34.7    
35.2    
35.6    
36.1    
36.5    
37.0    
37.4    
37.9    
38.4    
38.8    
39.3    
39.7    
40.2    
40.6    
41.1    
41.6    
42.0    
42.5    
42.9    
43.4    
43.8    
44.3    
44.7    
45.2    
45.7    
46.1    
46.6    
47.0    
47.5    
47.9    
48.4    
48.9    
49.3    
49.8    
50.2    
50.7    
51.1    
51.6    
52.1    
52.5    
53.0    
53.4    
53.9    
54.3    
54.8    
55.3    
55.7    
56.2    
56.6    
57.1    
57.5    
58.0    
58.4    
58.9    
59.4    
59.8    
60.3    
60.7    
61.2    
61.6    
62.1    
62.6    
63.0    
63.5    
63.9    
64.4    
64.8    
65.3    
65.8    
66.2    
66.7    
67.1    
67.6    
68.0    
68.5    
68.9    
69.4    
69.9    
70.3    
70.8    
71.2    
71.7    
72.1    
72.6    
73.1    
73.5    
74.0    
74.4    
74.9    
75.3    
75.8    
76.3    
76.7    
77.2    
77.6    
78.1    
78.5    
79.0    
79.5    
79.9    
80.4    
80.8    
81.3    
81.7    
82.2    
82.6    
83.1    
83.6    
84.0    
84.5    
84.9    
85.4    
85.8    
86.3    
86.8    
87.2    
87.7    
88.1    
88.6    
89.0    
89.5    
90.0    
90.4    
90.9    
91.3    
91.8    
92.2    
92.7    
93.2    
93.6    
94.1    
94.5    
95.0    
95.4    
95.9    
96.3    
96.8    
97.3    
97.7    
98.2    
98.6    
99.1    
99.5    
-found 27 predictions from path traversal
Error with prediction: snap lend_intergenic: 305775, rend_intergenic: 301845  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 317635, rend_intergenic: 310454  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 21 predictions persist after filtering for low support
	-no exons in range 1 - 14395