-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_16/scaffold_16_12887215-13054715

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_16-snap.2458-T1
Valid prediction for GlimmerHMM_glimmerT_39283-T1
Valid prediction for Augustus_model.g26214.t1
Valid prediction for snap_scaffold_16-snap.2441-T1
Sorry, intron length (3) is less than minimum required (10)
Valid prediction for snap_scaffold_16-snap.2472-T1
Valid prediction for snap_scaffold_16-snap.2465-T1
Valid prediction for GlimmerHMM_glimmerT_39267-T1
Valid prediction for GlimmerHMM_glimmerT_39273-T1
Valid prediction for GlimmerHMM_glimmerT_39269-T1
Valid prediction for snap_scaffold_16-snap.2437-T1
Valid prediction for snap_scaffold_16-snap.2462-T1
Valid prediction for Augustus_model.g26212.t1
Valid prediction for GlimmerHMM_glimmerT_39272-T1
Valid prediction for snap_scaffold_16-snap.2461-T1
Valid prediction for GlimmerHMM_glimmerT_39289-T1
Valid prediction for snap_scaffold_16-snap.2463-T1
Valid prediction for GlimmerHMM_glimmerT_39278-T1
Valid prediction for snap_scaffold_16-snap.2467-T1
Valid prediction for snap_scaffold_16-snap.2471-T1
Valid prediction for Augustus_model.g26219.t1
Valid prediction for GlimmerHMM_glimmerT_39266-T1
Valid prediction for snap_scaffold_16-snap.2466-T1
Valid prediction for Augustus_model.g26210.t1
Valid prediction for GlimmerHMM_glimmerT_39271-T1
Valid prediction for snap_scaffold_16-snap.2451-T1
Valid prediction for GlimmerHMM_glimmerT_39287-T1
Valid prediction for snap_scaffold_16-snap.2452-T1
Valid prediction for snap_scaffold_16-snap.2443-T1
Valid prediction for Augustus_model.g26211.t1
Valid prediction for snap_scaffold_16-snap.2456-T1
Valid prediction for GlimmerHMM_glimmerT_39282-T1
Valid prediction for snap_scaffold_16-snap.2442-T1
Valid prediction for snap_scaffold_16-snap.2468-T1
Valid prediction for Augustus_model.g26213.t1
Valid prediction for snap_scaffold_16-snap.2446-T1
Valid prediction for GlimmerHMM_glimmerT_39290-T1
Valid prediction for snap_scaffold_16-snap.2438-T1
Valid prediction for GlimmerHMM_glimmerT_39268-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_16-snap.2448-T1
Valid prediction for snap_scaffold_16-snap.2455-T1
Valid prediction for GlimmerHMM_glimmerT_39281-T1
Valid prediction for GlimmerHMM_glimmerT_39286-T1
Valid prediction for snap_scaffold_16-snap.2449-T1
Valid prediction for Augustus_model.g26218.t1
Valid prediction for Augustus_model.g26216.t1
Valid prediction for snap_scaffold_16-snap.2440-T1
Valid prediction for GlimmerHMM_glimmerT_39285-T1
Valid prediction for snap_scaffold_16-snap.2445-T1
Valid prediction for GlimmerHMM_glimmerT_39277-T1
Valid prediction for snap_scaffold_16-snap.2453-T1
Valid prediction for snap_scaffold_16-snap.2460-T1
Valid prediction for Augustus_model.g26215.t1
Valid prediction for snap_scaffold_16-snap.2454-T1
Valid prediction for Augustus_model.g26217.t1
Valid prediction for snap_scaffold_16-snap.2444-T1
Valid prediction for GlimmerHMM_glimmerT_39284-T1
Valid prediction for snap_scaffold_16-snap.2439-T1
Valid prediction for snap_scaffold_16-snap.2469-T1
Valid prediction for GlimmerHMM_glimmerT_39288-T1
Valid prediction for snap_scaffold_16-snap.2450-T1
Valid prediction for GlimmerHMM_glimmerT_39280-T1
Valid prediction for snap_scaffold_16-snap.2457-T1
Valid prediction for GlimmerHMM_glimmerT_39274-T1
Valid prediction for GlimmerHMM_glimmerT_39275-T1
Valid prediction for Augustus_model.g26220.t1
Valid prediction for snap_scaffold_16-snap.2447-T1
Valid prediction for snap_scaffold_16-snap.2470-T1
Valid prediction for GlimmerHMM_glimmerT_39270-T1
Valid prediction for GlimmerHMM_glimmerT_39276-T1
Valid prediction for snap_scaffold_16-snap.2459-T1
Valid prediction for snap_scaffold_16-snap.2464-T1
Valid prediction for GlimmerHMM_glimmerT_39279-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 11434, rend_intergenic: 7021  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23365, rend_intergenic: 11840  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41754, rend_intergenic: 23877  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42205, rend_intergenic: 41765  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61239, rend_intergenic: 42396  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74046, rend_intergenic: 62194  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93137, rend_intergenic: 76790  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95249, rend_intergenic: 93240  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113404, rend_intergenic: 103719  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143139, rend_intergenic: 125684  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164260, rend_intergenic: 153695  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 167501
-exon list size: 269


building trellis

0.4    
0.7    
1.1    
1.5    
1.8    
2.2    
2.6    
3.0    
3.3    
3.7    
4.1    
4.4    
4.8    
5.2    
5.5    
5.9    
6.3    
6.6    
7.0    
7.4    
7.7    
8.1    
8.5    
8.9    
9.2    
9.6    
10.0    
10.3    
10.7    
11.1    
11.4    
11.8    
12.2    
12.5    
12.9    
13.3    
13.7    
14.0    
14.4    
14.8    
15.1    
15.5    
15.9    
16.2    
16.6    
17.0    
17.3    
17.7    
18.1    
18.5    
18.8    
19.2    
19.6    
19.9    
20.3    
20.7    
21.0    
21.4    
21.8    
22.1    
22.5    
22.9    
23.2    
23.6    
24.0    
24.4    
24.7    
25.1    
25.5    
25.8    
26.2    
26.6    
26.9    
27.3    
27.7    
28.0    
28.4    
28.8    
29.2    
29.5    
29.9    
30.3    
30.6    
31.0    
31.4    
31.7    
32.1    
32.5    
32.8    
33.2    
33.6    
33.9    
34.3    
34.7    
35.1    
35.4    
35.8    
36.2    
36.5    
36.9    
37.3    
37.6    
38.0    
38.4    
38.7    
39.1    
39.5    
39.9    
40.2    
40.6    
41.0    
41.3    
41.7    
42.1    
42.4    
42.8    
43.2    
43.5    
43.9    
44.3    
44.6    
45.0    
45.4    
45.8    
46.1    
46.5    
46.9    
47.2    
47.6    
48.0    
48.3    
48.7    
49.1    
49.4    
49.8    
50.2    
50.6    
50.9    
51.3    
51.7    
52.0    
52.4    
52.8    
53.1    
53.5    
53.9    
54.2    
54.6    
55.0    
55.4    
55.7    
56.1    
56.5    
56.8    
57.2    
57.6    
57.9    
58.3    
58.7    
59.0    
59.4    
59.8    
60.1    
60.5    
60.9    
61.3    
61.6    
62.0    
62.4    
62.7    
63.1    
63.5    
63.8    
64.2    
64.6    
64.9    
65.3    
65.7    
66.1    
66.4    
66.8    
67.2    
67.5    
67.9    
68.3    
68.6    
69.0    
69.4    
69.7    
70.1    
70.5    
70.8    
71.2    
71.6    
72.0    
72.3    
72.7    
73.1    
73.4    
73.8    
74.2    
74.5    
74.9    
75.3    
75.6    
76.0    
76.4    
76.8    
77.1    
77.5    
77.9    
78.2    
78.6    
79.0    
79.3    
79.7    
80.1    
80.4    
80.8    
81.2    
81.5    
81.9    
82.3    
82.7    
83.0    
83.4    
83.8    
84.1    
84.5    
84.9    
85.2    
85.6    
86.0    
86.3    
86.7    
87.1    
87.5    
87.8    
88.2    
88.6    
88.9    
89.3    
89.7    
90.0    
90.4    
90.8    
91.1    
91.5    
91.9    
92.3    
92.6    
93.0    
93.4    
93.7    
94.1    
94.5    
94.8    
95.2    
95.6    
95.9    
96.3    
96.7    
97.0    
97.4    
97.8    
98.2    
98.5    
98.9    
99.3    
99.6    
-found 33 predictions from path traversal
Error with prediction: snap lend_intergenic: 11434, rend_intergenic: 7021  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 23365, rend_intergenic: 11840  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41754, rend_intergenic: 23877  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 42205, rend_intergenic: 41765  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 61239, rend_intergenic: 42396  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 74046, rend_intergenic: 62194  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93137, rend_intergenic: 76790  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95249, rend_intergenic: 93240  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113404, rend_intergenic: 103719  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 143139, rend_intergenic: 125684  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 164260, rend_intergenic: 153695  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 11 predictions persist after filtering for low support