-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_16/scaffold_16_12659148-12889459

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_16-snap.2422-T1
Valid prediction for snap_scaffold_16-snap.2415-T1
Valid prediction for GlimmerHMM_glimmerT_39256-T1
Valid prediction for GlimmerHMM_glimmerT_39237-T1
Valid prediction for Augustus_model.g26205.t1
Valid prediction for snap_scaffold_16-snap.2408-T1
Valid prediction for Augustus_model.g26193.t1
Valid prediction for GlimmerHMM_glimmerT_39252-T1
Valid prediction for GlimmerHMM_glimmerT_39246-T1
Valid prediction for Augustus_model.g26206.t1
Valid prediction for snap_scaffold_16-snap.2430-T1
Valid prediction for snap_scaffold_16-snap.2428-T1
Valid prediction for GlimmerHMM_glimmerT_39261-T1
Valid prediction for snap_scaffold_16-snap.2391-T1
Valid prediction for snap_scaffold_16-snap.2425-T1
Valid prediction for GlimmerHMM_glimmerT_39264-T1
Valid prediction for GlimmerHMM_glimmerT_39240-T1
Valid prediction for snap_scaffold_16-snap.2397-T1
Valid prediction for GlimmerHMM_glimmerT_39232-T1
Valid prediction for Augustus_model.g26200.t1
Valid prediction for snap_scaffold_16-snap.2405-T1
Valid prediction for GlimmerHMM_glimmerT_39229-T1
Valid prediction for Augustus_model.g26197.t1
Valid prediction for snap_scaffold_16-snap.2420-T1
Valid prediction for GlimmerHMM_glimmerT_39254-T1
Valid prediction for GlimmerHMM_glimmerT_39250-T1
Valid prediction for snap_scaffold_16-snap.2395-T1
Valid prediction for snap_scaffold_16-snap.2407-T1
Valid prediction for GlimmerHMM_glimmerT_39239-T1
Valid prediction for Augustus_model.g26204.t1
Valid prediction for snap_scaffold_16-snap.2404-T1
Valid prediction for snap_scaffold_16-snap.2396-T1
Valid prediction for Augustus_model.g26209.t1
Valid prediction for Augustus_model.g26207.t1
Valid prediction for snap_scaffold_16-snap.2426-T1
Valid prediction for GlimmerHMM_glimmerT_39255-T1
Valid prediction for GlimmerHMM_glimmerT_39241-T1
Valid prediction for snap_scaffold_16-snap.2431-T1
Valid prediction for GlimmerHMM_glimmerT_39262-T1
Valid prediction for Augustus_model.g26202.t1
Valid prediction for GlimmerHMM_glimmerT_39234-T1
Valid prediction for snap_scaffold_16-snap.2412-T1
Valid prediction for Augustus_model.g26199.t1
Valid prediction for snap_scaffold_16-snap.2390-T1
Valid prediction for GlimmerHMM_glimmerT_39253-T1
Valid prediction for Augustus_model.g26203.t1
Valid prediction for snap_scaffold_16-snap.2419-T1
Valid prediction for snap_scaffold_16-snap.2435-T1
Valid prediction for GlimmerHMM_glimmerT_39263-T1
Valid prediction for snap_scaffold_16-snap.2410-T1
Sorry, intron length (7) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_39236-T1
Valid prediction for snap_scaffold_16-snap.2414-T1
Valid prediction for Augustus_model.g26194.t1
Valid prediction for GlimmerHMM_glimmerT_39258-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g26196.t1
Valid prediction for Augustus_model.g26195.t1
Valid prediction for snap_scaffold_16-snap.2417-T1
Valid prediction for snap_scaffold_16-snap.2394-T1
Valid prediction for GlimmerHMM_glimmerT_39233-T1
Valid prediction for GlimmerHMM_glimmerT_39265-T1
Valid prediction for snap_scaffold_16-snap.2429-T1
Valid prediction for snap_scaffold_16-snap.2402-T1
Valid prediction for snap_scaffold_16-snap.2418-T1
Valid prediction for snap_scaffold_16-snap.2421-T1
Valid prediction for snap_scaffold_16-snap.2424-T1
Valid prediction for snap_scaffold_16-snap.2433-T1
Valid prediction for snap_scaffold_16-snap.2400-T1
Valid prediction for GlimmerHMM_glimmerT_39243-T1
Valid prediction for Augustus_model.g26208.t1
Valid prediction for snap_scaffold_16-snap.2434-T1
Valid prediction for GlimmerHMM_glimmerT_39260-T1
Valid prediction for GlimmerHMM_glimmerT_39230-T1
Valid prediction for snap_scaffold_16-snap.2427-T1
Valid prediction for snap_scaffold_16-snap.2401-T1
Valid prediction for Augustus_model.g26201.t1
Valid prediction for snap_scaffold_16-snap.2399-T1
Valid prediction for Augustus_model.g26198.t1
Valid prediction for GlimmerHMM_glimmerT_39231-T1
Valid prediction for GlimmerHMM_glimmerT_39259-T1
Valid prediction for snap_scaffold_16-snap.2432-T1
Valid prediction for snap_scaffold_16-snap.2406-T1
Valid prediction for GlimmerHMM_glimmerT_39248-T1
Valid prediction for GlimmerHMM_glimmerT_39238-T1
Valid prediction for snap_scaffold_16-snap.2436-T1
Valid prediction for GlimmerHMM_glimmerT_39251-T1
Valid prediction for snap_scaffold_16-snap.2409-T1
Valid prediction for GlimmerHMM_glimmerT_39244-T1
Valid prediction for GlimmerHMM_glimmerT_39257-T1
Valid prediction for snap_scaffold_16-snap.2392-T1
Valid prediction for GlimmerHMM_glimmerT_39247-T1
Valid prediction for GlimmerHMM_glimmerT_39245-T1
Valid prediction for snap_scaffold_16-snap.2416-T1
Valid prediction for snap_scaffold_16-snap.2393-T1
Valid prediction for snap_scaffold_16-snap.2398-T1
Valid prediction for snap_scaffold_16-snap.2413-T1
Valid prediction for snap_scaffold_16-snap.2423-T1
Valid prediction for GlimmerHMM_glimmerT_39242-T1
Valid prediction for snap_scaffold_16-snap.2403-T1
Valid prediction for snap_scaffold_16-snap.2411-T1
Valid prediction for GlimmerHMM_glimmerT_39249-T1
Valid prediction for GlimmerHMM_glimmerT_39235-T1
Valid prediction for GlimmerHMM_glimmerT_39228-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9226, rend_intergenic: 6797  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22696, rend_intergenic: 18547  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65114, rend_intergenic: 27315  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77673, rend_intergenic: 65656  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79220, rend_intergenic: 77679  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94359, rend_intergenic: 79634  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98040, rend_intergenic: 95422  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101596, rend_intergenic: 98478  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107014, rend_intergenic: 102055  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113376, rend_intergenic: 108870  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121122, rend_intergenic: 116820  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125587, rend_intergenic: 122236  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150363, rend_intergenic: 129502  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157625, rend_intergenic: 150451  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165538, rend_intergenic: 163646  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 196680, rend_intergenic: 166875  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200313, rend_intergenic: 198868  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204764, rend_intergenic: 202498  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 223269, rend_intergenic: 218741  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 230249, rend_intergenic: 224406  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 68080, rend_intergenic: 68077  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 224013, rend_intergenic: 224010  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 230312
-exon list size: 400


building trellis

0.2    
0.5    
0.7    
1.0    
1.2    
1.5    
1.7    
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2.5    
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3.7    
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9.5    
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10.0    
10.2    
10.4    
10.7    
10.9    
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11.4    
11.7    
11.9    
12.2    
12.4    
12.7    
12.9    
13.2    
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13.7    
13.9    
14.2    
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14.7    
14.9    
15.2    
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15.9    
16.2    
16.4    
16.7    
16.9    
17.2    
17.4    
17.7    
17.9    
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18.4    
18.7    
18.9    
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19.9    
20.1    
20.4    
20.6    
20.9    
21.1    
21.4    
21.6    
21.9    
22.1    
22.4    
22.6    
22.9    
23.1    
23.4    
23.6    
23.9    
24.1    
24.4    
24.6    
24.9    
25.1    
25.4    
25.6    
25.9    
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26.4    
26.6    
26.9    
27.1    
27.4    
27.6    
27.9    
28.1    
28.4    
28.6    
28.9    
29.1    
29.4    
29.6    
29.9    
30.1    
30.3    
30.6    
30.8    
31.1    
31.3    
31.6    
31.8    
32.1    
32.3    
32.6    
32.8    
33.1    
33.3    
33.6    
33.8    
34.1    
34.3    
34.6    
34.8    
35.1    
35.3    
35.6    
35.8    
36.1    
36.3    
36.6    
36.8    
37.1    
37.3    
37.6    
37.8    
38.1    
38.3    
38.6    
38.8    
39.1    
39.3    
39.6    
39.8    
40.0    
40.3    
40.5    
40.8    
41.0    
41.3    
41.5    
41.8    
42.0    
42.3    
42.5    
42.8    
43.0    
43.3    
43.5    
43.8    
44.0    
44.3    
44.5    
44.8    
45.0    
45.3    
45.5    
45.8    
46.0    
46.3    
46.5    
46.8    
47.0    
47.3    
47.5    
47.8    
48.0    
48.3    
48.5    
48.8    
49.0    
49.3    
49.5    
49.8    
50.0    
50.2    
50.5    
50.7    
51.0    
51.2    
51.5    
51.7    
52.0    
52.2    
52.5    
52.7    
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53.2    
53.5    
53.7    
54.0    
54.2    
54.5    
54.7    
55.0    
55.2    
55.5    
55.7    
56.0    
56.2    
56.5    
56.7    
57.0    
57.2    
57.5    
57.7    
58.0    
58.2    
58.5    
58.7    
59.0    
59.2    
59.5    
59.7    
60.0    
60.2    
60.4    
60.7    
60.9    
61.2    
61.4    
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61.9    
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62.4    
62.7    
62.9    
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63.9    
64.2    
64.4    
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65.9    
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66.4    
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66.9    
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67.4    
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68.7    
68.9    
69.2    
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69.9    
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70.4    
70.6    
70.9    
71.1    
71.4    
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73.4    
73.6    
73.9    
74.1    
74.4    
74.6    
74.9    
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75.4    
75.6    
75.9    
76.1    
76.4    
76.6    
76.9    
77.1    
77.4    
77.6    
77.9    
78.1    
78.4    
78.6    
78.9    
79.1    
79.4    
79.6    
79.9    
80.1    
80.3    
80.6    
80.8    
81.1    
81.3    
81.6    
81.8    
82.1    
82.3    
82.6    
82.8    
83.1    
83.3    
83.6    
83.8    
84.1    
84.3    
84.6    
84.8    
85.1    
85.3    
85.6    
85.8    
86.1    
86.3    
86.6    
86.8    
87.1    
87.3    
87.6    
87.8    
88.1    
88.3    
88.6    
88.8    
89.1    
89.3    
89.6    
89.8    
90.0    
90.3    
90.5    
90.8    
91.0    
91.3    
91.5    
91.8    
92.0    
92.3    
92.5    
92.8    
93.0    
93.3    
93.5    
93.8    
94.0    
94.3    
94.5    
94.8    
95.0    
95.3    
95.5    
95.8    
96.0    
96.3    
96.5    
96.8    
97.0    
97.3    
97.5    
97.8    
98.0    
98.3    
98.5    
98.8    
99.0    
99.3    
99.5    
99.8    
-found 43 predictions from path traversal
Error with prediction: snap lend_intergenic: 9226, rend_intergenic: 6797  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22696, rend_intergenic: 18547  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 65114, rend_intergenic: 27315  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 77673, rend_intergenic: 65656  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 79220, rend_intergenic: 77679  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 94359, rend_intergenic: 79634  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 98040, rend_intergenic: 95422  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101596, rend_intergenic: 98478  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107014, rend_intergenic: 102055  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 113376, rend_intergenic: 108870  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121122, rend_intergenic: 116820  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125587, rend_intergenic: 122236  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150363, rend_intergenic: 129502  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 157625, rend_intergenic: 150451  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165538, rend_intergenic: 163646  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 196680, rend_intergenic: 166875  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200313, rend_intergenic: 198868  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204764, rend_intergenic: 202498  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 223269, rend_intergenic: 218741  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 230249, rend_intergenic: 224406  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 68080, rend_intergenic: 68077  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 224013, rend_intergenic: 224010  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 17 predictions persist after filtering for low support