-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_16/scaffold_16_10613216-10807911

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_16-snap.1973-T1
Couldn't classify 133348, 133493
Sorry, prediction pasa_asmbl_16552.p1 fails validation.
(ATG)	 CT	127411-127534	GT	AGG
(GTG)	 AG	128292-128357	GT	AGG
(TTA)	 AG	129795-129872	GT	AGG
(CTA)	 AG	131922-131988	GT	AAG
(CAG)	 AG	132373-132518	GT	TGG
(GTC)	 AG	133348-133493	AT	ACA
-recovered pasa_asmbl_16552.p1, initial, 127411, 127534
-recovered pasa_asmbl_16552.p1, internal, 128292, 128357
-recovered pasa_asmbl_16552.p1, internal, 129795, 129872
-recovered pasa_asmbl_16552.p1, internal, 131922, 131988
-recovered pasa_asmbl_16552.p1, internal, 132373, 132518
Valid prediction for GlimmerHMM_glimmerT_38962-T1
Valid prediction for Augustus_model.g26023.t1
Couldn't classify 83289, 83639
Sorry, prediction pasa_asmbl_16550.p3 fails validation.
(GAC)	 GA	83289-83639	AG	AAA
Valid prediction for GlimmerHMM_glimmerT_38967-T1
Valid prediction for GlimmerHMM_glimmerT_38970-T1
Valid prediction for snap_scaffold_16-snap.1965-T1
Valid prediction for GlimmerHMM_glimmerT_38976-T1
Valid prediction for GlimmerHMM_glimmerT_38957-T1
Valid prediction for Augustus_model.g26015.t1
Valid prediction for GlimmerHMM_glimmerT_38971-T1
Valid prediction for snap_scaffold_16-snap.1966-T1
Valid prediction for snap_scaffold_16-snap.1976-T1
Valid prediction for snap_scaffold_16-snap.1962-T1
Valid prediction for Augustus_model.g26016.t1
Valid prediction for Augustus_model.g26029.t1
Valid prediction for GlimmerHMM_glimmerT_38963-T1
Couldn't classify 137972, 138055
Couldn't classify 139671, 140104
Sorry, prediction pasa_asmbl_16555.p1 fails validation.
(GGA)	 CA	137972-138055	GT	AGG
(GAC)	 AG	139022-139208	GT	AGG
(GAG)	 AG	139671-140104	AA	CCA
-recovered pasa_asmbl_16555.p1, internal, 139022, 139208
Valid prediction for GlimmerHMM_glimmerT_38980-T1
Couldn't classify 157378, 157436
Couldn't classify 158530, 158650
Sorry, prediction pasa_asmbl_16756.p1 fails validation.
(GAA)	 AG	157378-157436	GT	AGG
(TAC)	 AG	157651-157811	GT	AGG
(GTC)	 AG	158063-158177	GT	AGG
(GTC)	 AG	158530-158650	GG	TAG
-recovered pasa_asmbl_16756.p1, internal, 157378, 157436
-recovered pasa_asmbl_16756.p1, internal, 157651, 157811
-recovered pasa_asmbl_16756.p1, internal, 158063, 158177
Valid prediction for snap_scaffold_16-snap.1968-T1
Valid prediction for Augustus_model.g26027.t1
Valid prediction for Augustus_model.g26025.t1
Valid prediction for Augustus_model.g26026.t1
Valid prediction for snap_scaffold_16-snap.1964-T1
Valid prediction for GlimmerHMM_glimmerT_38973-T1
Valid prediction for snap_scaffold_16-snap.1993-T1
Valid prediction for GlimmerHMM_glimmerT_38958-T1
Valid prediction for GlimmerHMM_glimmerT_38977-T1
Valid prediction for GlimmerHMM_glimmerT_38974-T1
Valid prediction for snap_scaffold_16-snap.1971-T1
Valid prediction for GlimmerHMM_glimmerT_38959-T1
Valid prediction for snap_scaffold_16-snap.1986-T1
Valid prediction for snap_scaffold_16-snap.1978-T1
Valid prediction for snap_scaffold_16-snap.1983-T1
Valid prediction for GlimmerHMM_glimmerT_38956-T1
Valid prediction for snap_scaffold_16-snap.1982-T1
Valid prediction for Augustus_model.g26017.t1
Valid prediction for Augustus_model.g26028.t1
Valid prediction for snap_scaffold_16-snap.1975-T1
Valid prediction for snap_scaffold_16-snap.1989-T1
Valid prediction for GlimmerHMM_glimmerT_38978-T1
Valid prediction for Augustus_model.g26022.t1
Valid prediction for snap_scaffold_16-snap.1972-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g26020.t1
Valid prediction for snap_scaffold_16-snap.1980-T1
Valid prediction for GlimmerHMM_glimmerT_38960-T1
Valid prediction for GlimmerHMM_glimmerT_38964-T1
Valid prediction for snap_scaffold_16-snap.1977-T1
Valid prediction for GlimmerHMM_glimmerT_38968-T1
Valid prediction for GlimmerHMM_glimmerT_38961-T1
Valid prediction for snap_scaffold_16-snap.1959-T1
Valid prediction for GlimmerHMM_glimmerT_38982-T1
Valid prediction for Augustus_model.g26031.t1
Valid prediction for snap_scaffold_16-snap.1961-T1
Valid prediction for GlimmerHMM_glimmerT_38969-T1
Valid prediction for Augustus_model.g26021.t1
Valid prediction for snap_scaffold_16-snap.1984-T1
Valid prediction for snap_scaffold_16-snap.1985-T1
Valid prediction for snap_scaffold_16-snap.1991-T1
Valid prediction for snap_scaffold_16-snap.1969-T1
Valid prediction for GlimmerHMM_glimmerT_38981-T1
Valid prediction for Augustus_model.g26030.t1
Valid prediction for snap_scaffold_16-snap.1988-T1
Valid prediction for snap_scaffold_16-snap.1974-T1
Valid prediction for GlimmerHMM_glimmerT_38965-T1
Valid prediction for Augustus_model.g26019.t1
Valid prediction for snap_scaffold_16-snap.1992-T1
Valid prediction for snap_scaffold_16-snap.1990-T1
Valid prediction for snap_scaffold_16-snap.1967-T1
Valid prediction for snap_scaffold_16-snap.1963-T1
Valid prediction for snap_scaffold_16-snap.1979-T1
Valid prediction for Augustus_model.g26018.t1
Valid prediction for GlimmerHMM_glimmerT_38975-T1
Valid prediction for snap_scaffold_16-snap.1960-T1
Valid prediction for Augustus_model.g26024.t1
Valid prediction for snap_scaffold_16-snap.1970-T1
Valid prediction for snap_scaffold_16-snap.1981-T1
Valid prediction for GlimmerHMM_glimmerT_38979-T1
Valid prediction for GlimmerHMM_glimmerT_38955-T1
Valid prediction for GlimmerHMM_glimmerT_38972-T1
Valid prediction for snap_scaffold_16-snap.1987-T1
Valid prediction for GlimmerHMM_glimmerT_38966-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 14255, rend_intergenic: 10414  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22410, rend_intergenic: 17669  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34799, rend_intergenic: 31713  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81712, rend_intergenic: 77202  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83102, rend_intergenic: 82496  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146359, rend_intergenic: 137081  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154570, rend_intergenic: 147143  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159231, rend_intergenic: 156326  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177763, rend_intergenic: 170500  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 189852, rend_intergenic: 187524  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 194696
-exon list size: 276


building trellis

0.4    
0.7    
1.1    
1.4    
1.8    
2.2    
2.5    
2.9    
3.2    
3.6    
4.0    
4.3    
4.7    
5.0    
5.4    
5.8    
6.1    
6.5    
6.8    
7.2    
7.6    
7.9    
8.3    
8.6    
9.0    
9.4    
9.7    
10.1    
10.4    
10.8    
11.2    
11.5    
11.9    
12.2    
12.6    
12.9    
13.3    
13.7    
14.0    
14.4    
14.7    
15.1    
15.5    
15.8    
16.2    
16.5    
16.9    
17.3    
17.6    
18.0    
18.3    
18.7    
19.1    
19.4    
19.8    
20.1    
20.5    
20.9    
21.2    
21.6    
21.9    
22.3    
22.7    
23.0    
23.4    
23.7    
24.1    
24.5    
24.8    
25.2    
25.5    
25.9    
26.3    
26.6    
27.0    
27.3    
27.7    
28.1    
28.4    
28.8    
29.1    
29.5    
29.9    
30.2    
30.6    
30.9    
31.3    
31.7    
32.0    
32.4    
32.7    
33.1    
33.5    
33.8    
34.2    
34.5    
34.9    
35.3    
35.6    
36.0    
36.3    
36.7    
37.1    
37.4    
37.8    
38.1    
38.5    
38.8    
39.2    
39.6    
39.9    
40.3    
40.6    
41.0    
41.4    
41.7    
42.1    
42.4    
42.8    
43.2    
43.5    
43.9    
44.2    
44.6    
45.0    
45.3    
45.7    
46.0    
46.4    
46.8    
47.1    
47.5    
47.8    
48.2    
48.6    
48.9    
49.3    
49.6    
50.0    
50.4    
50.7    
51.1    
51.4    
51.8    
52.2    
52.5    
52.9    
53.2    
53.6    
54.0    
54.3    
54.7    
55.0    
55.4    
55.8    
56.1    
56.5    
56.8    
57.2    
57.6    
57.9    
58.3    
58.6    
59.0    
59.4    
59.7    
60.1    
60.4    
60.8    
61.2    
61.5    
61.9    
62.2    
62.6    
62.9    
63.3    
63.7    
64.0    
64.4    
64.7    
65.1    
65.5    
65.8    
66.2    
66.5    
66.9    
67.3    
67.6    
68.0    
68.3    
68.7    
69.1    
69.4    
69.8    
70.1    
70.5    
70.9    
71.2    
71.6    
71.9    
72.3    
72.7    
73.0    
73.4    
73.7    
74.1    
74.5    
74.8    
75.2    
75.5    
75.9    
76.3    
76.6    
77.0    
77.3    
77.7    
78.1    
78.4    
78.8    
79.1    
79.5    
79.9    
80.2    
80.6    
80.9    
81.3    
81.7    
82.0    
82.4    
82.7    
83.1    
83.5    
83.8    
84.2    
84.5    
84.9    
85.3    
85.6    
86.0    
86.3    
86.7    
87.1    
87.4    
87.8    
88.1    
88.5    
88.8    
89.2    
89.6    
89.9    
90.3    
90.6    
91.0    
91.4    
91.7    
92.1    
92.4    
92.8    
93.2    
93.5    
93.9    
94.2    
94.6    
95.0    
95.3    
95.7    
96.0    
96.4    
96.8    
97.1    
97.5    
97.8    
98.2    
98.6    
98.9    
99.3    
99.6    
-found 31 predictions from path traversal
Error with prediction: snap lend_intergenic: 14255, rend_intergenic: 10414  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 22410, rend_intergenic: 17669  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 34799, rend_intergenic: 31713  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 81712, rend_intergenic: 77202  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 83102, rend_intergenic: 82496  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146359, rend_intergenic: 137081  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 154570, rend_intergenic: 147143  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159231, rend_intergenic: 156326  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 177763, rend_intergenic: 170500  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 189852, rend_intergenic: 187524  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 21 predictions persist after filtering for low support