-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_16/scaffold_16_10233454-10413252

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_16-snap.1909-T1
Valid prediction for GlimmerHMM_glimmerT_38914-T1
Valid prediction for GlimmerHMM_glimmerT_38905-T1
Valid prediction for Augustus_model.g25978.t1
Valid prediction for snap_scaffold_16-snap.1915-T1
Valid prediction for GlimmerHMM_glimmerT_38907-T1
Valid prediction for snap_scaffold_16-snap.1885-T1
Valid prediction for snap_scaffold_16-snap.1896-T1
Valid prediction for Augustus_model.g25986.t1
Valid prediction for GlimmerHMM_glimmerT_38906-T1
Valid prediction for snap_scaffold_16-snap.1899-T1
Valid prediction for snap_scaffold_16-snap.1883-T1
Valid prediction for snap_scaffold_16-snap.1914-T1
Valid prediction for snap_scaffold_16-snap.1904-T1
Valid prediction for GlimmerHMM_glimmerT_38909-T1
Valid prediction for snap_scaffold_16-snap.1889-T1
Valid prediction for snap_scaffold_16-snap.1901-T1
Valid prediction for snap_scaffold_16-snap.1897-T1
Valid prediction for snap_scaffold_16-snap.1912-T1
Valid prediction for snap_scaffold_16-snap.1903-T1
Couldn't classify 73224, 73499
Couldn't classify 73731, 73775
Sorry, prediction pasa_asmbl_16782.p1 fails validation.
(GAC)	 AC	73224-73499	GT	TGG
(CTC)	 AG	73731-73775	CC	CCC
Valid prediction for GlimmerHMM_glimmerT_38902-T1
Valid prediction for GlimmerHMM_glimmerT_38912-T1
Valid prediction for snap_scaffold_16-snap.1886-T1
Valid prediction for GlimmerHMM_glimmerT_38904-T1
Valid prediction for snap_scaffold_16-snap.1891-T1
Valid prediction for Augustus_model.g25989.t1
Valid prediction for GlimmerHMM_glimmerT_38901-T1
Valid prediction for Augustus_model.g25981.t1
Valid prediction for GlimmerHMM_glimmerT_38900-T1
Valid prediction for Augustus_model.g25982.t1
Valid prediction for snap_scaffold_16-snap.1884-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_38917-T1
Valid prediction for snap_scaffold_16-snap.1900-T1
Valid prediction for snap_scaffold_16-snap.1895-T1
Valid prediction for snap_scaffold_16-snap.1892-T1
Valid prediction for snap_scaffold_16-snap.1910-T1
Valid prediction for snap_scaffold_16-snap.1888-T1
Couldn't classify 128839, 130347
Sorry, prediction pasa_asmbl_17312.p1 fails validation.
(CTG)	 CA	128839-130347	GG	GAG
Valid prediction for Augustus_model.g25979.t1
Valid prediction for snap_scaffold_16-snap.1902-T1
Valid prediction for snap_scaffold_16-snap.1908-T1
Valid prediction for snap_scaffold_16-snap.1911-T1
Valid prediction for Augustus_model.g25987.t1
Valid prediction for Augustus_model.g25984.t1
Valid prediction for GlimmerHMM_glimmerT_38908-T1
Valid prediction for GlimmerHMM_glimmerT_38903-T1
Valid prediction for GlimmerHMM_glimmerT_38915-T1
Valid prediction for GlimmerHMM_glimmerT_38916-T1
Valid prediction for GlimmerHMM_glimmerT_38913-T1
Valid prediction for Augustus_model.g25988.t1
Valid prediction for Augustus_model.g25980.t1
Valid prediction for snap_scaffold_16-snap.1890-T1
Valid prediction for Augustus_model.g25983.t1
Valid prediction for snap_scaffold_16-snap.1894-T1
Sorry, intron length (9) is less than minimum required (10)
Valid prediction for snap_scaffold_16-snap.1913-T1
Valid prediction for snap_scaffold_16-snap.1907-T1
Valid prediction for snap_scaffold_16-snap.1905-T1
Valid prediction for snap_scaffold_16-snap.1893-T1
Valid prediction for snap_scaffold_16-snap.1887-T1
Valid prediction for snap_scaffold_16-snap.1906-T1
Valid prediction for Augustus_model.g25985.t1
Valid prediction for snap_scaffold_16-snap.1916-T1
Valid prediction for snap_scaffold_16-snap.1898-T1
Valid prediction for GlimmerHMM_glimmerT_38911-T1
Valid prediction for GlimmerHMM_glimmerT_38910-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 61088, rend_intergenic: 59554  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62584, rend_intergenic: 61805  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80585, rend_intergenic: 63037  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91692, rend_intergenic: 89913  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96404, rend_intergenic: 93392  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101058, rend_intergenic: 99363  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136407, rend_intergenic: 135396  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141769, rend_intergenic: 139010  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 179799
-exon list size: 267


building trellis

0.4    
0.7    
1.1    
1.5    
1.9    
2.2    
2.6    
3.0    
3.3    
3.7    
4.1    
4.5    
4.8    
5.2    
5.6    
5.9    
6.3    
6.7    
7.1    
7.4    
7.8    
8.2    
8.6    
8.9    
9.3    
9.7    
10.0    
10.4    
10.8    
11.2    
11.5    
11.9    
12.3    
12.6    
13.0    
13.4    
13.8    
14.1    
14.5    
14.9    
15.2    
15.6    
16.0    
16.4    
16.7    
17.1    
17.5    
17.8    
18.2    
18.6    
19.0    
19.3    
19.7    
20.1    
20.4    
20.8    
21.2    
21.6    
21.9    
22.3    
22.7    
23.0    
23.4    
23.8    
24.2    
24.5    
24.9    
25.3    
25.7    
26.0    
26.4    
26.8    
27.1    
27.5    
27.9    
28.3    
28.6    
29.0    
29.4    
29.7    
30.1    
30.5    
30.9    
31.2    
31.6    
32.0    
32.3    
32.7    
33.1    
33.5    
33.8    
34.2    
34.6    
34.9    
35.3    
35.7    
36.1    
36.4    
36.8    
37.2    
37.5    
37.9    
38.3    
38.7    
39.0    
39.4    
39.8    
40.1    
40.5    
40.9    
41.3    
41.6    
42.0    
42.4    
42.8    
43.1    
43.5    
43.9    
44.2    
44.6    
45.0    
45.4    
45.7    
46.1    
46.5    
46.8    
47.2    
47.6    
48.0    
48.3    
48.7    
49.1    
49.4    
49.8    
50.2    
50.6    
50.9    
51.3    
51.7    
52.0    
52.4    
52.8    
53.2    
53.5    
53.9    
54.3    
54.6    
55.0    
55.4    
55.8    
56.1    
56.5    
56.9    
57.2    
57.6    
58.0    
58.4    
58.7    
59.1    
59.5    
59.9    
60.2    
60.6    
61.0    
61.3    
61.7    
62.1    
62.5    
62.8    
63.2    
63.6    
63.9    
64.3    
64.7    
65.1    
65.4    
65.8    
66.2    
66.5    
66.9    
67.3    
67.7    
68.0    
68.4    
68.8    
69.1    
69.5    
69.9    
70.3    
70.6    
71.0    
71.4    
71.7    
72.1    
72.5    
72.9    
73.2    
73.6    
74.0    
74.3    
74.7    
75.1    
75.5    
75.8    
76.2    
76.6    
77.0    
77.3    
77.7    
78.1    
78.4    
78.8    
79.2    
79.6    
79.9    
80.3    
80.7    
81.0    
81.4    
81.8    
82.2    
82.5    
82.9    
83.3    
83.6    
84.0    
84.4    
84.8    
85.1    
85.5    
85.9    
86.2    
86.6    
87.0    
87.4    
87.7    
88.1    
88.5    
88.8    
89.2    
89.6    
90.0    
90.3    
90.7    
91.1    
91.4    
91.8    
92.2    
92.6    
92.9    
93.3    
93.7    
94.1    
94.4    
94.8    
95.2    
95.5    
95.9    
96.3    
96.7    
97.0    
97.4    
97.8    
98.1    
98.5    
98.9    
99.3    
99.6    
-found 19 predictions from path traversal
Error with prediction: snap lend_intergenic: 61088, rend_intergenic: 59554  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62584, rend_intergenic: 61805  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80585, rend_intergenic: 63037  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 91692, rend_intergenic: 89913  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 96404, rend_intergenic: 93392  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101058, rend_intergenic: 99363  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136407, rend_intergenic: 135396  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141769, rend_intergenic: 139010  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 11 predictions persist after filtering for low support