-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1586

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 36, 122
Sorry, prediction snap_scaffold_1586-snap.1-T1 fails validation.
(TAC)	 AG	36-122	GT	CAG
(ATG)	 AG	872-1072	GT	AGG
(GAA)	 AG	1540-1620	GT	TTG
(TCG)	 AG	1678-1722	GT	ACG
(GCC)	 AG	1892-2035	TC	AAT
-recovered snap_scaffold_1586-snap.1-T1, initial, 872, 1072
-recovered snap_scaffold_1586-snap.1-T1, terminal, 1892, 2035
-recovered snap_scaffold_1586-snap.1-T1, internal, 36, 122
-recovered snap_scaffold_1586-snap.1-T1, internal, 872, 1072
-recovered snap_scaffold_1586-snap.1-T1, internal, 1540, 1620
-recovered snap_scaffold_1586-snap.1-T1, internal, 1678, 1722
Couldn't classify 1, 122
Sorry, prediction Augustus_model.g40567.t1 fails validation.
(TCA)	 TT	1-122	GT	CAG
(ATG)	 AG	872-1072	GT	AGG
(GAA)	 AG	1540-1620	GT	TTG
(GCC)	 AG	1892-2035	TC	AAT
-recovered Augustus_model.g40567.t1, initial, 872, 1072
-recovered Augustus_model.g40567.t1, terminal, 1892, 2035
-recovered Augustus_model.g40567.t1, internal, 872, 1072
-recovered Augustus_model.g40567.t1, internal, 1540, 1620
Valid prediction for GlimmerHMM_glimmerT_61226-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2184
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support