-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1582

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1858, 1923
Sorry, prediction snap_scaffold_1582-snap.1-T1 fails validation.
(ATG)	 TG	811-841	GT	AAG
(TGG)	 AG	1294-1339	GT	TGG
(CGA)	 AG	1582-1624	GT	AGG
(CTG)	 AG	1858-1923	GT	CGG
-recovered snap_scaffold_1582-snap.1-T1, initial, 811, 841
-recovered snap_scaffold_1582-snap.1-T1, internal, 1294, 1339
-recovered snap_scaffold_1582-snap.1-T1, internal, 1582, 1624
-recovered snap_scaffold_1582-snap.1-T1, internal, 1858, 1923
Couldn't classify 1858, 1923
Sorry, prediction Augustus_model.g40566.t1 fails validation.
(ATG)	 AC	1299-1339	GT	TGG
(CGA)	 AG	1582-1624	GT	AGG
(CTG)	 AG	1858-1923	GT	CGG
-recovered Augustus_model.g40566.t1, initial, 1299, 1339
-recovered Augustus_model.g40566.t1, internal, 1582, 1624
-recovered Augustus_model.g40566.t1, internal, 1858, 1923
Couldn't classify 1565, 1624
Sorry, prediction GlimmerHMM_glimmerT_61223-T1 fails validation.
(CTG)	 AG	1565-1624	GT	AGG
(CTG)	 AG	1858-1971	GG	AAG
-recovered GlimmerHMM_glimmerT_61223-T1, terminal, 1858, 1971
-recovered GlimmerHMM_glimmerT_61223-T1, internal, 1565, 1624

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2188
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support