-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1581

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 56, 200
Couldn't classify 239, 462
Sorry, prediction snap_scaffold_1581-snap.1-T1 fails validation.
(ATT)	 AG	56-200	GT	AGG
(GAG)	 AG	239-462	GT	AGG
add_exon() Sorry, snap_scaffold_1581-snap.1-T1 56-200-terminal-3 is invalid.
-recovered snap_scaffold_1581-snap.1-T1, terminal, 56, 200
-recovered snap_scaffold_1581-snap.1-T1, internal, 56, 200
-recovered snap_scaffold_1581-snap.1-T1, internal, 239, 462
Couldn't classify 121, 214
Sorry, prediction Augustus_model.g40565.t1 fails validation.
(GGA)	 AG	121-214	GT	CAG
(AGG)	 AG	367-462	GT	AGG
(CCT)	 AG	765-782	TC	AGT
-recovered Augustus_model.g40565.t1, terminal, 765, 782
-recovered Augustus_model.g40565.t1, internal, 121, 214
-recovered Augustus_model.g40565.t1, internal, 367, 462

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2191
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support