-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1580

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 330, 511
Sorry, prediction pasa_asmbl_15988.p1 fails validation.
(GTG)	 CG	330-511	GT	AAG
(TAC)	 AG	654-761	GT	ATG
(CCG)	 AG	899-1025	GT	TGG
(CCC)	 AG	1376-1453	GT	CGG
(GTT)	 AG	1569-1592	TC	AGT
-recovered pasa_asmbl_15988.p1, terminal, 1569, 1592
-recovered pasa_asmbl_15988.p1, internal, 654, 761
-recovered pasa_asmbl_15988.p1, internal, 899, 1025
-recovered pasa_asmbl_15988.p1, internal, 1376, 1453
Couldn't classify 280, 511
Sorry, prediction GlimmerHMM_glimmerT_61222-T1 fails validation.
(AGG)	 AG	280-511	GT	AAG
(TAC)	 AG	654-761	GT	ATG
(CCG)	 AG	899-1025	GT	TGG
(CCC)	 AG	1376-1453	GT	CGG
(GTT)	 AG	1569-1592	TC	AGT
-recovered GlimmerHMM_glimmerT_61222-T1, terminal, 1569, 1592
-recovered GlimmerHMM_glimmerT_61222-T1, internal, 280, 511
-recovered GlimmerHMM_glimmerT_61222-T1, internal, 654, 761
-recovered GlimmerHMM_glimmerT_61222-T1, internal, 899, 1025
-recovered GlimmerHMM_glimmerT_61222-T1, internal, 1376, 1453
Couldn't classify 280, 511
Sorry, prediction snap_scaffold_1580-snap.1-T1 fails validation.
(AGG)	 AG	280-511	GT	AAG
(TAC)	 AG	654-761	GT	ATG
(CCG)	 AG	899-1025	GT	TGG
(CCC)	 AG	1376-1453	GT	CGG
(GTT)	 AG	1569-1592	TC	AGT
-recovered snap_scaffold_1580-snap.1-T1, terminal, 1569, 1592
-recovered snap_scaffold_1580-snap.1-T1, internal, 280, 511
-recovered snap_scaffold_1580-snap.1-T1, internal, 654, 761
-recovered snap_scaffold_1580-snap.1-T1, internal, 899, 1025
-recovered snap_scaffold_1580-snap.1-T1, internal, 1376, 1453
Couldn't classify 280, 511
Sorry, prediction Augustus_model.g40564.t1 fails validation.
(AGG)	 AG	280-511	GT	AAG
(TAC)	 AG	654-761	GT	ATG
(CCG)	 AG	899-1025	GT	TGG
(CCC)	 AG	1376-1453	GT	CGG
(GTT)	 AG	1569-1592	TC	AGT
-recovered Augustus_model.g40564.t1, terminal, 1569, 1592
-recovered Augustus_model.g40564.t1, internal, 280, 511
-recovered Augustus_model.g40564.t1, internal, 654, 761
-recovered Augustus_model.g40564.t1, internal, 899, 1025
-recovered Augustus_model.g40564.t1, internal, 1376, 1453

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2191
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support