-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1577

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 346, 444
Couldn't classify 1846, 1970
Sorry, prediction Augustus_model.g40561.t1 fails validation.
(AAC)	 AG	346-444	GT	AGG
(CTG)	 AG	840-1070	GT	TGG
(TCA)	 AG	1711-1736	GT	AGG
(GGT)	 AG	1846-1970	GT	TGG
-recovered Augustus_model.g40561.t1, internal, 346, 444
-recovered Augustus_model.g40561.t1, internal, 840, 1070
-recovered Augustus_model.g40561.t1, internal, 1711, 1736
-recovered Augustus_model.g40561.t1, internal, 1846, 1970
Couldn't classify 346, 444
Couldn't classify 1846, 1970
Sorry, prediction snap_scaffold_1577-snap.1-T1 fails validation.
(AAC)	 AG	346-444	GT	AGG
(CTG)	 AG	840-1283	GT	GGG
(TCA)	 AG	1711-1736	GT	AGG
(GGT)	 AG	1846-1970	GT	TGG
-recovered snap_scaffold_1577-snap.1-T1, internal, 346, 444
-recovered snap_scaffold_1577-snap.1-T1, internal, 840, 1283
-recovered snap_scaffold_1577-snap.1-T1, internal, 1711, 1736
-recovered snap_scaffold_1577-snap.1-T1, internal, 1846, 1970
Couldn't classify 346, 444
Sorry, prediction GlimmerHMM_glimmerT_61220-T1 fails validation.
(AAC)	 AG	346-444	GT	AGG
(CTG)	 AG	840-1031	GT	TGG
(GGT)	 AG	1846-1974	GG	GAG
-recovered GlimmerHMM_glimmerT_61220-T1, terminal, 1846, 1974
-recovered GlimmerHMM_glimmerT_61220-T1, internal, 346, 444
-recovered GlimmerHMM_glimmerT_61220-T1, internal, 840, 1031

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2195
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support