-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_157

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g39689.t1
Valid prediction for snap_scaffold_157-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_59920-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_157-snap.2-T1
Couldn't classify 12062, 12133
Sorry, prediction Augustus_model.g39688.t1 fails validation.
(ATG)	 GC	4114-4122	GT	TGG
(GAT)	 AG	11645-11795	GT	CCG
(CTC)	 AG	12062-12133		GC
-recovered Augustus_model.g39688.t1, initial, 4114, 4122
-recovered Augustus_model.g39688.t1, internal, 11645, 11795
Valid prediction for snap_scaffold_157-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_59921-T1
add_exon() Sorry, GlimmerHMM_glimmerT_59921-T1 481-985-terminal-1 is invalid.
Valid prediction for GlimmerHMM_glimmerT_59919-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 11112, rend_intergenic: 8403  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 12133
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 11112, rend_intergenic: 8403  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support