-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1566

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1687, 1765
Sorry, prediction GlimmerHMM_glimmerT_61216-T1 fails validation.
(ATG)	 AG	73-223	GT	CGG
(GAC)	 AG	308-453	GT	TAG
(CAG)	 AG	1687-1765	GT	CGG
-recovered GlimmerHMM_glimmerT_61216-T1, initial, 73, 223
-recovered GlimmerHMM_glimmerT_61216-T1, internal, 73, 223
-recovered GlimmerHMM_glimmerT_61216-T1, internal, 308, 453
-recovered GlimmerHMM_glimmerT_61216-T1, internal, 1687, 1765
Couldn't classify 2058, 2201
Sorry, prediction snap_scaffold_1566-snap.2-T1 fails validation.
(ATG)	 AG	73-223	GT	CGG
(GAC)	 AG	308-514	GT	AGG
(GCC)	 AG	1690-1765	GT	CGG
(AAG)	 AG	2058-2201	GT	CAG
-recovered snap_scaffold_1566-snap.2-T1, initial, 73, 223
-recovered snap_scaffold_1566-snap.2-T1, internal, 73, 223
-recovered snap_scaffold_1566-snap.2-T1, internal, 308, 514
-recovered snap_scaffold_1566-snap.2-T1, internal, 1690, 1765
-recovered snap_scaffold_1566-snap.2-T1, internal, 2058, 2201
Couldn't classify 1, 223
Sorry, prediction Augustus_model.g40555.t1 fails validation.
(TGG)	 AA	1-223	GT	CGG
(GAC)	 AG	308-443	GT	TGG
(CAG)	 AG	1687-1769	AG	AGA
-recovered Augustus_model.g40555.t1, terminal, 1687, 1769
-recovered Augustus_model.g40555.t1, internal, 308, 443

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 463, 538
Couldn't classify 1977, 2186
Sorry, prediction snap_scaffold_1566-snap.1-T1 fails validation.
(AGG)	 AG	463-538	GT	GGG
(GGG)	 AG	1800-1940	GT	GCG
(GTT)	 AG	1977-2186	GT	AGG
-recovered snap_scaffold_1566-snap.1-T1, internal, 463, 538
-recovered snap_scaffold_1566-snap.1-T1, internal, 1800, 1940
-recovered snap_scaffold_1566-snap.1-T1, internal, 1977, 2186

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1750, rend_intergenic: 73  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2212
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1750, rend_intergenic: 73  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support