-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1565

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 553, 606
Sorry, prediction snap_scaffold_1565-snap.1-T1 fails validation.
(TGG)	 AG	553-606	GT	AGG
(TTT)	 AG	1798-1866	GT	ACG
(GCT)	 AG	1900-2089	GA	AGG
-recovered snap_scaffold_1565-snap.1-T1, terminal, 1900, 2089
-recovered snap_scaffold_1565-snap.1-T1, internal, 553, 606
-recovered snap_scaffold_1565-snap.1-T1, internal, 1798, 1866

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 171, 515
Couldn't classify 1146, 1228
Sorry, prediction snap_scaffold_1565-snap.2-T1 fails validation.
(GTG)	 AG	171-515	GT	GGG
(TTG)	 AG	1146-1228	GT	TGG
-recovered snap_scaffold_1565-snap.2-T1, internal, 171, 515
-recovered snap_scaffold_1565-snap.2-T1, internal, 1146, 1228
Valid prediction for GlimmerHMM_glimmerT_61215-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61215-T1 171-523-terminal-1 is invalid.
Couldn't classify 1146, 1228
Sorry, prediction Augustus_model.g40554.t1 fails validation.
(ATG)	 TG	137-515	GT	GGG
(TTG)	 AG	1146-1228	GT	TGG
-recovered Augustus_model.g40554.t1, initial, 137, 515
-recovered Augustus_model.g40554.t1, internal, 1146, 1228

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2089, rend_intergenic: 985  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2212
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2089, rend_intergenic: 985  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support