-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1560

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 382, 483
Couldn't classify 2069, 2135
Sorry, prediction snap_scaffold_1560-snap.1-T1 fails validation.
(CAC)	 AG	382-483	GT	GAG
(ATC)	 AG	768-832	GT	ACG
(TGC)	 AG	1044-1179	GT	AGG
(GGT)	 AG	1524-1952	GT	AGG
(AGG)	 AG	2069-2135	GT	TGG
-recovered snap_scaffold_1560-snap.1-T1, internal, 382, 483
-recovered snap_scaffold_1560-snap.1-T1, internal, 768, 832
-recovered snap_scaffold_1560-snap.1-T1, internal, 1044, 1179
-recovered snap_scaffold_1560-snap.1-T1, internal, 1524, 1952
-recovered snap_scaffold_1560-snap.1-T1, internal, 2069, 2135
Couldn't classify 382, 483
Couldn't classify 2069, 2135
Sorry, prediction Augustus_model.g40552.t1 fails validation.
(CAC)	 AG	382-483	GT	GAG
(ATC)	 AG	768-832	GT	ACG
(TGC)	 AG	1044-1179	GT	AGG
(GGT)	 AG	1524-1952	GT	AGG
(AGG)	 AG	2069-2135	GT	TGG
-recovered Augustus_model.g40552.t1, internal, 382, 483
-recovered Augustus_model.g40552.t1, internal, 768, 832
-recovered Augustus_model.g40552.t1, internal, 1044, 1179
-recovered Augustus_model.g40552.t1, internal, 1524, 1952
-recovered Augustus_model.g40552.t1, internal, 2069, 2135
Valid prediction for GlimmerHMM_glimmerT_61213-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2217
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support