-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_156

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 222, 279
Sorry, prediction Augustus_model.g39687.t1 fails validation.
(ACC)	 AG	222-279	GT	CAG
(TCG)	 AG	1255-1453	GT	AAG
(GTT)	 AG	2168-2374	GT	AGG
(GTG)	 AG	3683-3910	GT	CGG
(CTG)	 AG	4273-4405	GT	AGG
(GTC)	 AG	4621-4801	GT	AGG
(GGC)	 AG	5148-5441	GT	AGG
(AAC)	 AG	6284-6352	GT	AGG
(GGA)	 AG	6722-7196	GT	AGG
(GTA)	 AG	8402-8579	GT	AGG
(CAT)	 AG	8725-8923	GT	AGG
(AAA)	 AG	10710-10721	CC	GAC
-recovered Augustus_model.g39687.t1, terminal, 10710, 10721
-recovered Augustus_model.g39687.t1, internal, 222, 279
-recovered Augustus_model.g39687.t1, internal, 1255, 1453
-recovered Augustus_model.g39687.t1, internal, 2168, 2374
-recovered Augustus_model.g39687.t1, internal, 3683, 3910
-recovered Augustus_model.g39687.t1, internal, 4273, 4405
-recovered Augustus_model.g39687.t1, internal, 4621, 4801
-recovered Augustus_model.g39687.t1, internal, 5148, 5441
-recovered Augustus_model.g39687.t1, internal, 6284, 6352
-recovered Augustus_model.g39687.t1, internal, 6722, 7196
-recovered Augustus_model.g39687.t1, internal, 8402, 8579
-recovered Augustus_model.g39687.t1, internal, 8725, 8923
Couldn't classify 222, 341
Sorry, prediction snap_scaffold_156-snap.1-T1 fails validation.
(ACC)	 AG	222-341	GT	CAG
(TCG)	 AG	1255-1453	GT	AAG
(GTT)	 AG	2168-2374	GT	AGG
(GTG)	 AG	3683-3910	GT	CGG
(CTG)	 AG	4273-4405	GT	AGG
(GTC)	 AG	4621-4801	GT	AGG
(GGC)	 AG	5148-5441	GT	AGG
(AAC)	 AG	6284-6352	GT	AGG
(GGA)	 AG	6722-7196	GT	AGG
(GTA)	 AG	8402-8579	GT	AGG
(GCT)	 AG	8590-8968	CA	GAC
-recovered snap_scaffold_156-snap.1-T1, terminal, 8590, 8968
-recovered snap_scaffold_156-snap.1-T1, internal, 222, 341
-recovered snap_scaffold_156-snap.1-T1, internal, 1255, 1453
-recovered snap_scaffold_156-snap.1-T1, internal, 2168, 2374
-recovered snap_scaffold_156-snap.1-T1, internal, 3683, 3910
-recovered snap_scaffold_156-snap.1-T1, internal, 4273, 4405
-recovered snap_scaffold_156-snap.1-T1, internal, 4621, 4801
-recovered snap_scaffold_156-snap.1-T1, internal, 5148, 5441
-recovered snap_scaffold_156-snap.1-T1, internal, 6284, 6352
-recovered snap_scaffold_156-snap.1-T1, internal, 6722, 7196
-recovered snap_scaffold_156-snap.1-T1, internal, 8402, 8579
Sorry, intron length (9) is less than minimum required (10)
Couldn't classify 6719, 6959
Sorry, prediction pasa_asmbl_15980.p1 fails validation.
(CAG)	 TG	6719-6959	GT	CGG
(GTA)	 AG	8402-8579	GT	AGG
(CAT)	 AG	8725-8923	GT	AGG
(AAA)	 AG	10710-10721	CC	GAC
-recovered pasa_asmbl_15980.p1, terminal, 10710, 10721
-recovered pasa_asmbl_15980.p1, internal, 8402, 8579
-recovered pasa_asmbl_15980.p1, internal, 8725, 8923
Valid prediction for GlimmerHMM_glimmerT_59918-T1
Couldn't classify 1243, 1453
Couldn't classify 2168, 2271
Sorry, prediction pasa_asmbl_15983.p1 fails validation.
(CCT)	 CC	1243-1453	GT	AAG
(GTT)	 AG	2168-2271	CC	CCC
Valid prediction for snap_scaffold_156-snap.4-T1
Couldn't classify 5148, 5210
Sorry, prediction pasa_asmbl_15979.p1 fails validation.
(ATG)	 TG	3901-3910	GT	CGG
(CTG)	 AG	4273-4405	GT	AGG
(GTC)	 AG	4621-4801	GT	AGG
(GGC)	 AG	5148-5210	CC	CCC
-recovered pasa_asmbl_15979.p1, initial, 3901, 3910
-recovered pasa_asmbl_15979.p1, internal, 4273, 4405
-recovered pasa_asmbl_15979.p1, internal, 4621, 4801

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_156-snap.3-T1
Couldn't classify 10826, 10965
Sorry, prediction snap_scaffold_156-snap.2-T1 fails validation.
(ATG)	 AG	9314-9454	GT	GGG
(GCC)	 AG	9830-10060	GT	GAG
(GGC)	 AG	10826-10965	GT	AGG
-recovered snap_scaffold_156-snap.2-T1, initial, 9314, 9454
-recovered snap_scaffold_156-snap.2-T1, internal, 9314, 9454
-recovered snap_scaffold_156-snap.2-T1, internal, 9830, 10060
-recovered snap_scaffold_156-snap.2-T1, internal, 10826, 10965
Valid prediction for GlimmerHMM_glimmerT_59917-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8968, rend_intergenic: 1205  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 12169
-exon list size: 42


building trellis

2.3    
4.5    
6.8    
9.1    
11.4    
13.6    
15.9    
18.2    
20.5    
22.7    
25.0    
27.3    
29.5    
31.8    
34.1    
36.4    
38.6    
40.9    
43.2    
45.5    
47.7    
50.0    
52.3    
54.5    
56.8    
59.1    
61.4    
63.6    
65.9    
68.2    
70.5    
72.7    
75.0    
77.3    
79.5    
81.8    
84.1    
86.4    
88.6    
90.9    
93.2    
95.5    
97.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 8968, rend_intergenic: 1205  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support