-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1555

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 55, 143
Couldn't classify 1033, 1121
Sorry, prediction snap_scaffold_1555-snap.2-T1 fails validation.
(TTG)	 AG	55-143	GT	AAG
(AAC)	 AG	454-472	GT	AGG
(TTG)	 AG	1033-1121	GT	AAG
-recovered snap_scaffold_1555-snap.2-T1, internal, 55, 143
-recovered snap_scaffold_1555-snap.2-T1, internal, 454, 472
-recovered snap_scaffold_1555-snap.2-T1, internal, 1033, 1121

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 327, 440
Couldn't classify 2126, 2225
Sorry, prediction Augustus_model.g40550.t1 fails validation.
(GTG)	 AG	327-440	GT	AGG
(TTG)	 AG	770-915	GT	AAG
(ACT)	 AG	1148-1229	GT	AGG
(TTG)	 AG	1748-1893	GT	AAG
(ACT)	 AG	2126-2225		GC
-recovered Augustus_model.g40550.t1, internal, 327, 440
-recovered Augustus_model.g40550.t1, internal, 770, 915
-recovered Augustus_model.g40550.t1, internal, 1148, 1229
-recovered Augustus_model.g40550.t1, internal, 1748, 1893
Couldn't classify 327, 440
Sorry, prediction GlimmerHMM_glimmerT_61211-T1 fails validation.
(GTG)	 AG	327-440	GT	AGG
(TTG)	 AG	770-915	GT	AAG
(ACT)	 AG	1148-1229	GT	AGG
(TTG)	 AG	1748-1897	GC	AGG
-recovered GlimmerHMM_glimmerT_61211-T1, terminal, 1748, 1897
-recovered GlimmerHMM_glimmerT_61211-T1, internal, 327, 440
-recovered GlimmerHMM_glimmerT_61211-T1, internal, 770, 915
-recovered GlimmerHMM_glimmerT_61211-T1, internal, 1148, 1229
-recovered GlimmerHMM_glimmerT_61211-T1, internal, 1748, 1897
Couldn't classify 327, 440
Couldn't classify 2126, 2207
Sorry, prediction snap_scaffold_1555-snap.1-T1 fails validation.
(GTG)	 AG	327-440	GT	AGG
(TTG)	 AG	770-915	GT	AAG
(ACT)	 AG	1148-1229	GT	AGG
(TTG)	 AG	1748-1893	GT	AAG
(ACT)	 AG	2126-2207	GT	AGG
-recovered snap_scaffold_1555-snap.1-T1, internal, 327, 440
-recovered snap_scaffold_1555-snap.1-T1, internal, 770, 915
-recovered snap_scaffold_1555-snap.1-T1, internal, 1148, 1229
-recovered snap_scaffold_1555-snap.1-T1, internal, 1748, 1893
-recovered snap_scaffold_1555-snap.1-T1, internal, 2126, 2207
Couldn't classify 327, 440
Couldn't classify 2126, 2207
Sorry, prediction pasa_asmbl_15975.p1 fails validation.
(GTG)	 AG	327-440	GT	AGG
(TTG)	 AG	770-915	GT	AAG
(ACT)	 AG	2126-2207	GT	AGG
-recovered pasa_asmbl_15975.p1, internal, 327, 440
-recovered pasa_asmbl_15975.p1, internal, 770, 915
-recovered pasa_asmbl_15975.p1, internal, 2126, 2207

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1899, rend_intergenic: 55  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2225
-exon list size: 11


building trellis

7.7    
15.4    
23.1    
30.8    
38.5    
46.2    
53.8    
61.5    
69.2    
76.9    
84.6    
92.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1899, rend_intergenic: 55  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support