-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_155

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_155-snap.1-T1
Valid prediction for snap_scaffold_155-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_59916-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_59915-T1
Valid prediction for Augustus_model.g39686.t1
Couldn't classify 7478, 7590
Sorry, prediction snap_scaffold_155-snap.2-T1 fails validation.
(ATG)	 TG	2878-2891	GT	ACG
(CCG)	 AG	4959-5273	GT	AGG
(GAT)	 AG	6747-6835	GT	GGG
(GTC)	 AG	7288-7423	GT	CTG
(GAT)	 AG	7478-7590	GT	ACG
-recovered snap_scaffold_155-snap.2-T1, initial, 2878, 2891
-recovered snap_scaffold_155-snap.2-T1, internal, 4959, 5273
-recovered snap_scaffold_155-snap.2-T1, internal, 6747, 6835
-recovered snap_scaffold_155-snap.2-T1, internal, 7288, 7423
-recovered snap_scaffold_155-snap.2-T1, internal, 7478, 7590

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5888, rend_intergenic: 4586  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9298, rend_intergenic: 8902  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 12175
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 5888, rend_intergenic: 4586  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 9298, rend_intergenic: 8902  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support