-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1542

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1542-snap.1-T1
Couldn't classify 370, 417
Sorry, prediction Augustus_model.g40546.t1 fails validation.
(CCC)	 AG	370-417	GT	AAG
(CAC)	 AG	714-812	GT	TGG
(GTG)	 AG	1226-1308	GT	AGG
(AAC)	 AG	1662-1800	GT	CAG
(AGC)	 AG	1881-2011	GT	GAG
-recovered Augustus_model.g40546.t1, terminal, 1881, 2011
-recovered Augustus_model.g40546.t1, internal, 370, 417
-recovered Augustus_model.g40546.t1, internal, 714, 812
-recovered Augustus_model.g40546.t1, internal, 1226, 1308
-recovered Augustus_model.g40546.t1, internal, 1662, 1800
-recovered Augustus_model.g40546.t1, internal, 1881, 2011
Valid prediction for GlimmerHMM_glimmerT_61206-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2246
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support