-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_154

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 128, 265
Couldn't classify 11970, 12033
Sorry, prediction snap_scaffold_154-snap.1-T1 fails validation.
(CTC)	 AG	128-265	GT	AAG
(GAG)	 AG	3138-3555	GT	CTG
(GGG)	 AG	6184-6269	GT	CAG
(GCC)	 AG	6337-6361	GT	AGG
(GGG)	 AG	8475-8623	GT	CAG
(GAC)	 AG	8647-8776	GT	AGG
(ACT)	 AG	10874-11399	GT	AGG
(TCC)	 AG	11970-12033	GT	CAG
-recovered snap_scaffold_154-snap.1-T1, internal, 128, 265
-recovered snap_scaffold_154-snap.1-T1, internal, 3138, 3555
-recovered snap_scaffold_154-snap.1-T1, internal, 6184, 6269
-recovered snap_scaffold_154-snap.1-T1, internal, 6337, 6361
-recovered snap_scaffold_154-snap.1-T1, internal, 8475, 8623
-recovered snap_scaffold_154-snap.1-T1, internal, 8647, 8776
-recovered snap_scaffold_154-snap.1-T1, internal, 10874, 11399
-recovered snap_scaffold_154-snap.1-T1, internal, 11970, 12033

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 11871, 12007
Sorry, prediction Augustus_model.g39684.t1 fails validation.
(ATG)	 GC	11460-11535	GT	AGG
(CCT)	 AG	11871-12007	GT	AGG
-recovered Augustus_model.g39684.t1, initial, 11460, 11535
-recovered Augustus_model.g39684.t1, internal, 11871, 12007
Couldn't classify 3472, 3581
Sorry, prediction GlimmerHMM_glimmerT_59914-T1 fails validation.
(GCA)	 AG	3472-3581	GT	AGG
(AGT)	 AG	5603-5761	GG	GAG
-recovered GlimmerHMM_glimmerT_59914-T1, terminal, 5603, 5761
-recovered GlimmerHMM_glimmerT_59914-T1, internal, 3472, 3581
Couldn't classify 213, 320
Couldn't classify 11871, 12007
Sorry, prediction snap_scaffold_154-snap.2-T1 fails validation.
(CCC)	 AG	213-320	GT	ATG
(AAA)	 AG	972-1137	GT	TGG
(GCA)	 AG	3472-3581	GT	AGG
(GGG)	 AG	3758-3875	GT	GGG
(AGT)	 AG	5603-5749	GT	CGG
(AAC)	 AG	11485-11535	GT	AGG
(CCT)	 AG	11871-12007	GT	AGG
-recovered snap_scaffold_154-snap.2-T1, internal, 213, 320
-recovered snap_scaffold_154-snap.2-T1, internal, 972, 1137
-recovered snap_scaffold_154-snap.2-T1, internal, 3472, 3581
-recovered snap_scaffold_154-snap.2-T1, internal, 3758, 3875
-recovered snap_scaffold_154-snap.2-T1, internal, 5603, 5749
-recovered snap_scaffold_154-snap.2-T1, internal, 11485, 11535
-recovered snap_scaffold_154-snap.2-T1, internal, 11871, 12007
Valid prediction for Augustus_model.g39685.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 12033, rend_intergenic: 209  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 12215
-exon list size: 33


building trellis

2.9    
5.7    
8.6    
11.4    
14.3    
17.1    
20.0    
22.9    
25.7    
28.6    
31.4    
34.3    
37.1    
40.0    
42.9    
45.7    
48.6    
51.4    
54.3    
57.1    
60.0    
62.9    
65.7    
68.6    
71.4    
74.3    
77.1    
80.0    
82.9    
85.7    
88.6    
91.4    
94.3    
97.1    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 12033, rend_intergenic: 209  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support