-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1538

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 143, 375
Couldn't classify 2063, 2106
Sorry, prediction snap_scaffold_1538-snap.1-T1 fails validation.
(GTA)	 AG	143-375	GT	AGG
(CTC)	 AG	477-527	GT	ATG
(TTG)	 AG	862-1056	GT	AAG
(GTT)	 AG	1307-1390	GT	AGG
(GGA)	 AG	2063-2106	GT	CCG
-recovered snap_scaffold_1538-snap.1-T1, internal, 143, 375
-recovered snap_scaffold_1538-snap.1-T1, internal, 477, 527
-recovered snap_scaffold_1538-snap.1-T1, internal, 862, 1056
-recovered snap_scaffold_1538-snap.1-T1, internal, 1307, 1390
-recovered snap_scaffold_1538-snap.1-T1, internal, 2063, 2106

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1946, 2101
Sorry, prediction Augustus_model.g40544.t1 fails validation.
(ATG)	 AG	88-251	GT	AGG
(GAT)	 AG	357-507	GT	AGG
(GCT)	 AG	841-956	GT	AGG
(ATG)	 AG	1270-1419	GT	AGG
(GAC)	 AG	1718-1796	GT	AGG
(GTG)	 AG	1946-2101	GT	AGG
-recovered Augustus_model.g40544.t1, initial, 88, 251
add_exon() Sorry, Augustus_model.g40544.t1 1270-1419-initial-1 is invalid.
-recovered Augustus_model.g40544.t1, initial, 1270, 1419
-recovered Augustus_model.g40544.t1, internal, 88, 251
-recovered Augustus_model.g40544.t1, internal, 357, 507
-recovered Augustus_model.g40544.t1, internal, 841, 956
-recovered Augustus_model.g40544.t1, internal, 1270, 1419
-recovered Augustus_model.g40544.t1, internal, 1718, 1796
-recovered Augustus_model.g40544.t1, internal, 1946, 2101
Couldn't classify 79, 251
Couldn't classify 1946, 2101
Sorry, prediction snap_scaffold_1538-snap.2-T1 fails validation.
(GAT)	 AG	79-251	GT	AGG
(GAT)	 AG	357-507	GT	AGG
(GCT)	 AG	841-956	GT	AGG
(ATG)	 AG	1270-1419	GT	AGG
(GAC)	 AG	1718-1895	GT	CCG
(GTG)	 AG	1946-2101	GT	AGG
add_exon() Sorry, snap_scaffold_1538-snap.2-T1 1270-1419-initial-1 is invalid.
-recovered snap_scaffold_1538-snap.2-T1, initial, 1270, 1419
-recovered snap_scaffold_1538-snap.2-T1, internal, 79, 251
-recovered snap_scaffold_1538-snap.2-T1, internal, 357, 507
-recovered snap_scaffold_1538-snap.2-T1, internal, 841, 956
-recovered snap_scaffold_1538-snap.2-T1, internal, 1270, 1419
-recovered snap_scaffold_1538-snap.2-T1, internal, 1718, 1895
-recovered snap_scaffold_1538-snap.2-T1, internal, 1946, 2101
Valid prediction for GlimmerHMM_glimmerT_61204-T1
Couldn't classify 79, 251
Couldn't classify 1946, 2101
Sorry, prediction pasa_asmbl_15968.p1 fails validation.
(GAT)	 AG	79-251	GT	AGG
(GAT)	 AG	357-507	GT	AGG
(GCT)	 AG	841-956	GT	AGG
(ATG)	 AG	1270-1419	GT	AGG
(GAC)	 AG	1718-1796	GT	AGG
(GTG)	 AG	1946-2101	GT	AGG
add_exon() Sorry, pasa_asmbl_15968.p1 1270-1419-initial-1 is invalid.
-recovered pasa_asmbl_15968.p1, initial, 1270, 1419
-recovered pasa_asmbl_15968.p1, internal, 79, 251
-recovered pasa_asmbl_15968.p1, internal, 357, 507
-recovered pasa_asmbl_15968.p1, internal, 841, 956
-recovered pasa_asmbl_15968.p1, internal, 1270, 1419
-recovered pasa_asmbl_15968.p1, internal, 1718, 1796
-recovered pasa_asmbl_15968.p1, internal, 1946, 2101

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2106, rend_intergenic: 151  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2251
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2106, rend_intergenic: 151  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support