-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1537

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 288, 363
Couldn't classify 1834, 1945
Sorry, prediction snap_scaffold_1537-snap.2-T1 fails validation.
(GTC)	 AG	288-363	GT	GAG
(AGC)	 AG	1834-1945	GT	AGG
-recovered snap_scaffold_1537-snap.2-T1, internal, 288, 363
-recovered snap_scaffold_1537-snap.2-T1, internal, 1834, 1945

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g40543.t1
Couldn't classify 1411, 1540
Sorry, prediction GlimmerHMM_glimmerT_61203-T1 fails validation.
(GAG)	 AG	1411-1540	GT	ACG
(GAC)	 AG	1923-2084	GC	AGG
-recovered GlimmerHMM_glimmerT_61203-T1, terminal, 1923, 2084
-recovered GlimmerHMM_glimmerT_61203-T1, internal, 1411, 1540
-recovered GlimmerHMM_glimmerT_61203-T1, internal, 1923, 2084
Couldn't classify 416, 549
Couldn't classify 1923, 2080
Sorry, prediction snap_scaffold_1537-snap.1-T1 fails validation.
(TCC)	 AG	416-549	GT	TGG
(CGC)	 AG	719-840	GT	CGG
(GAC)	 AG	1923-2080	GT	AAG
-recovered snap_scaffold_1537-snap.1-T1, internal, 416, 549
-recovered snap_scaffold_1537-snap.1-T1, internal, 719, 840
-recovered snap_scaffold_1537-snap.1-T1, internal, 1923, 2080

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1839, rend_intergenic: 288  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2254
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 1839, rend_intergenic: 288  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support