-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1532

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1165, 1291
Sorry, prediction GlimmerHMM_glimmerT_61200-T1 fails validation.
(CCC)	 AG	1165-1291	GT	GGG
(CCG)	 AG	1600-1756	GA	GAG
-recovered GlimmerHMM_glimmerT_61200-T1, terminal, 1600, 1756
-recovered GlimmerHMM_glimmerT_61200-T1, internal, 1165, 1291
Couldn't classify 58, 174
Couldn't classify 1530, 1923
Sorry, prediction snap_scaffold_1532-snap.1-T1 fails validation.
(TAG)	 AG	58-174	GT	AAG
(CAA)	 AG	1170-1291	GT	GGG
(GGT)	 AG	1530-1923	GT	ATG
-recovered snap_scaffold_1532-snap.1-T1, internal, 58, 174
-recovered snap_scaffold_1532-snap.1-T1, internal, 1170, 1291
-recovered snap_scaffold_1532-snap.1-T1, internal, 1530, 1923

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2264
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support