-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1531

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 84, 186
Couldn't classify 806, 875
Sorry, prediction snap_scaffold_1531-snap.1-T1 fails validation.
(GTA)	 AG	84-186	GT	TGG
(GTC)	 AG	279-429	GT	GGG
(GTC)	 AG	806-875	GT	TAG
-recovered snap_scaffold_1531-snap.1-T1, internal, 84, 186
-recovered snap_scaffold_1531-snap.1-T1, internal, 279, 429
-recovered snap_scaffold_1531-snap.1-T1, internal, 806, 875
Couldn't classify 84, 186
Sorry, prediction GlimmerHMM_glimmerT_61199-T1 fails validation.
(GTA)	 AG	84-186	GT	TGG
(GTC)	 AG	279-429	GT	GGG
(GTC)	 AG	806-876	TA	AGT
-recovered GlimmerHMM_glimmerT_61199-T1, terminal, 806, 876
-recovered GlimmerHMM_glimmerT_61199-T1, internal, 84, 186
-recovered GlimmerHMM_glimmerT_61199-T1, internal, 279, 429
Couldn't classify 84, 186
Sorry, prediction Augustus_model.g40541.t1 fails validation.
(GTA)	 AG	84-186	GT	TGG
(GTC)	 AG	279-429	GT	GGG
(GTC)	 AG	806-876	TA	AGT
-recovered Augustus_model.g40541.t1, terminal, 806, 876
-recovered Augustus_model.g40541.t1, internal, 84, 186
-recovered Augustus_model.g40541.t1, internal, 279, 429

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2264
-exon list size: 7


building trellis

11.1    
22.2    
33.3    
44.4    
55.6    
66.7    
77.8    
88.9    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support