-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_153

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_153-snap.5-T1
Valid prediction for snap_scaffold_153-snap.4-T1
Valid prediction for GlimmerHMM_glimmerT_59913-T1
Valid prediction for GlimmerHMM_glimmerT_59911-T1
Valid prediction for Augustus_model.g39682.t1
Valid prediction for Augustus_model.g39683.t1
Couldn't classify 2004, 4673
Sorry, prediction snap_scaffold_153-snap.2-T1 fails validation.
(GCC)	 AG	2004-4673	GT	ACG
(GTG)	 AG	5780-5881	GT	ATG
(GCT)	 AG	6365-6468	CA	GAC
-recovered snap_scaffold_153-snap.2-T1, terminal, 6365, 6468
-recovered snap_scaffold_153-snap.2-T1, internal, 2004, 4673
-recovered snap_scaffold_153-snap.2-T1, internal, 5780, 5881
Valid prediction for snap_scaffold_153-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_59912-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 12231, 12281
Sorry, prediction snap_scaffold_153-snap.1-T1 fails validation.
(ATG)	 GC	2174-2197	GT	TGG
(TTC)	 AG	4904-4962	GT	ATG
(TGT)	 AG	5943-6078	GT	TTG
(GAA)	 AG	6140-6241	GT	AAG
(GCT)	 AG	6550-6768	GT	GGG
(GGA)	 AG	7181-7372	GT	TAG
(CCG)	 AG	12231-12281	GT	AGG
-recovered snap_scaffold_153-snap.1-T1, initial, 2174, 2197
-recovered snap_scaffold_153-snap.1-T1, internal, 4904, 4962
-recovered snap_scaffold_153-snap.1-T1, internal, 5943, 6078
-recovered snap_scaffold_153-snap.1-T1, internal, 6140, 6241
-recovered snap_scaffold_153-snap.1-T1, internal, 6550, 6768
-recovered snap_scaffold_153-snap.1-T1, internal, 7181, 7372
-recovered snap_scaffold_153-snap.1-T1, internal, 12231, 12281

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 10239, rend_intergenic: 2004  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 12412
-exon list size: 32


building trellis

2.9    
5.9    
8.8    
11.8    
14.7    
17.6    
20.6    
23.5    
26.5    
29.4    
32.4    
35.3    
38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 4 predictions from path traversal
Error with prediction: snap lend_intergenic: 10239, rend_intergenic: 2004  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 4 predictions persist after filtering for low support