-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1529

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for CodingQuarry_transcript_18290-T1
Couldn't classify 393, 522
Couldn't classify 2113, 2235
Sorry, prediction snap_scaffold_1529-snap.1-T1 fails validation.
(GAG)	 AG	393-522	GT	GGG
(GTT)	 AG	1279-1364	GT	AGG
(GCG)	 AG	2113-2235	GT	AGG
-recovered snap_scaffold_1529-snap.1-T1, internal, 393, 522
-recovered snap_scaffold_1529-snap.1-T1, internal, 1279, 1364
-recovered snap_scaffold_1529-snap.1-T1, internal, 2113, 2235
Valid prediction for pasa_asmbl_15965.p1
Couldn't classify 393, 522
Couldn't classify 1759, 1821
Sorry, prediction Augustus_model.g40539.t1 fails validation.
(GAG)	 AG	393-522	GT	GGG
(GTT)	 AG	1279-1364	GT	AGG
(GTC)	 AG	1759-1821	GT	TGG
-recovered Augustus_model.g40539.t1, internal, 393, 522
-recovered Augustus_model.g40539.t1, internal, 1279, 1364
-recovered Augustus_model.g40539.t1, internal, 1759, 1821
Couldn't classify 393, 554
Sorry, prediction GlimmerHMM_glimmerT_61196-T1 fails validation.
(GAG)	 AG	393-554	GT	CTG
(GTT)	 AG	1279-1329	CA	AGC
-recovered GlimmerHMM_glimmerT_61196-T1, terminal, 1279, 1329
-recovered GlimmerHMM_glimmerT_61196-T1, internal, 393, 554

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2266
-exon list size: 10


building trellis

8.3    
16.7    
25.0    
33.3    
41.7    
50.0    
58.3    
66.7    
75.0    
83.3    
91.7    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support