-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1523

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 203, 277
Sorry, prediction GlimmerHMM_glimmerT_61194-T1 fails validation.
(CAC)	 AG	203-277	GT	GGG
(CAG)	 AG	1538-1753	TC	AAT
-recovered GlimmerHMM_glimmerT_61194-T1, terminal, 1538, 1753
-recovered GlimmerHMM_glimmerT_61194-T1, internal, 203, 277
Couldn't classify 203, 277
Couldn't classify 1538, 1715
Sorry, prediction snap_scaffold_1523-snap.1-T1 fails validation.
(CAC)	 AG	203-277	GT	GGG
(CAG)	 AG	1538-1715	GT	AGG
-recovered snap_scaffold_1523-snap.1-T1, internal, 203, 277
-recovered snap_scaffold_1523-snap.1-T1, internal, 1538, 1715
Couldn't classify 203, 277
Sorry, prediction Augustus_model.g40536.t1 fails validation.
(CAC)	 AG	203-277	GT	GGG
(CAG)	 AG	1538-1753	TC	AAT
-recovered Augustus_model.g40536.t1, terminal, 1538, 1753
-recovered Augustus_model.g40536.t1, internal, 203, 277

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2271
-exon list size: 5


building trellis

14.3    
28.6    
42.9    
57.1    
71.4    
85.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support