-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_152

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_59908-T1
Couldn't classify 12231, 12358
Sorry, prediction Augustus_model.g39681.t1 fails validation.
(ATG)	 CG	11962-12052	GT	GGG
(TCC)	 AG	12231-12358	GT	TGG
-recovered Augustus_model.g39681.t1, initial, 11962, 12052
-recovered Augustus_model.g39681.t1, internal, 12231, 12358
Valid prediction for GlimmerHMM_glimmerT_59909-T1
Valid prediction for GlimmerHMM_glimmerT_59907-T1
Valid prediction for snap_scaffold_152-snap.4-T1
Valid prediction for Augustus_model.g39680.t1
Valid prediction for GlimmerHMM_glimmerT_59906-T1
Valid prediction for GlimmerHMM_glimmerT_59910-T1
Valid prediction for Augustus_model.g39679.t1
Couldn't classify 115, 259
Sorry, prediction snap_scaffold_152-snap.1-T1 fails validation.
(GTC)	 AG	115-259	GT	CAG
(CCG)	 AG	1220-1417	GT	TCG
(GTT)	 AG	6985-7124	GT	TGG
(CTG)	 AG	7791-7849	GT	CGG
(GGG)	 AG	7874-8034	GT	GAG
(TGC)	 AG	8139-8332	GT	AGG
(CGG)	 AG	8427-8531	TT	GAT
-recovered snap_scaffold_152-snap.1-T1, terminal, 8427, 8531
-recovered snap_scaffold_152-snap.1-T1, internal, 115, 259
-recovered snap_scaffold_152-snap.1-T1, internal, 1220, 1417
-recovered snap_scaffold_152-snap.1-T1, internal, 6985, 7124
-recovered snap_scaffold_152-snap.1-T1, internal, 7791, 7849
-recovered snap_scaffold_152-snap.1-T1, internal, 7874, 8034
-recovered snap_scaffold_152-snap.1-T1, internal, 8139, 8332

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_152-snap.3-T1
Valid prediction for snap_scaffold_152-snap.2-T1
Sorry, intron length (7) is less than minimum required (10)

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8531, rend_intergenic: 5518  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 10852, rend_intergenic: 8562  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 12425
-exon list size: 33


building trellis

2.9    
5.7    
8.6    
11.4    
14.3    
17.1    
20.0    
22.9    
25.7    
28.6    
31.4    
34.3    
37.1    
40.0    
42.9    
45.7    
48.6    
51.4    
54.3    
57.1    
60.0    
62.9    
65.7    
68.6    
71.4    
74.3    
77.1    
80.0    
82.9    
85.7    
88.6    
91.4    
94.3    
97.1    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 8531, rend_intergenic: 5518  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 10852, rend_intergenic: 8562  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support