-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1517

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 123, 326
Sorry, prediction GlimmerHMM_glimmerT_61187-T1 fails validation.
(ACG)	 AG	123-326	GT	AGG
(GGG)	 AG	645-793	GT	GGG
(GCT)	 AG	1785-1902	AT	AAA
-recovered GlimmerHMM_glimmerT_61187-T1, terminal, 1785, 1902
-recovered GlimmerHMM_glimmerT_61187-T1, internal, 123, 326
-recovered GlimmerHMM_glimmerT_61187-T1, internal, 645, 793
Couldn't classify 123, 326
Couldn't classify 1785, 1898
Sorry, prediction Augustus_model.g40531.t1 fails validation.
(ACG)	 AG	123-326	GT	AGG
(GGG)	 AG	645-793	GT	GGG
(GCT)	 AG	1785-1898	GT	TGG
-recovered Augustus_model.g40531.t1, internal, 123, 326
-recovered Augustus_model.g40531.t1, internal, 645, 793
-recovered Augustus_model.g40531.t1, internal, 1785, 1898
Couldn't classify 123, 326
Couldn't classify 1785, 1898
Sorry, prediction snap_scaffold_1517-snap.1-T1 fails validation.
(ACG)	 AG	123-326	GT	AGG
(GGG)	 AG	645-793	GT	GGG
(GCT)	 AG	1785-1898	GT	TGG
-recovered snap_scaffold_1517-snap.1-T1, internal, 123, 326
-recovered snap_scaffold_1517-snap.1-T1, internal, 645, 793
-recovered snap_scaffold_1517-snap.1-T1, internal, 1785, 1898
Couldn't classify 123, 326
Couldn't classify 1785, 1899
Sorry, prediction pasa_asmbl_15961.p1 fails validation.
(ACG)	 AG	123-326	GT	AGG
(GGG)	 AG	645-793	GT	GGG
(GCT)	 AG	1785-1899	TA	GGT
-recovered pasa_asmbl_15961.p1, internal, 123, 326
-recovered pasa_asmbl_15961.p1, internal, 645, 793

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2285
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support