-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1512

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_1512-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 160, 300
Sorry, prediction GlimmerHMM_glimmerT_61184-T1 fails validation.
(GAT)	 AG	160-300	GT	AGG
(TGC)	 AG	432-760	GT	AGG
(TTC)	 AG	924-1051	GT	AGG
(GTC)	 AG	1308-1468	AC	AAA
-recovered GlimmerHMM_glimmerT_61184-T1, terminal, 1308, 1468
-recovered GlimmerHMM_glimmerT_61184-T1, internal, 160, 300
-recovered GlimmerHMM_glimmerT_61184-T1, internal, 432, 760
-recovered GlimmerHMM_glimmerT_61184-T1, internal, 924, 1051
Couldn't classify 160, 300
Couldn't classify 2138, 2254
Sorry, prediction snap_scaffold_1512-snap.2-T1 fails validation.
(GAT)	 AG	160-300	GT	AGG
(TGC)	 AG	432-760	GT	AGG
(TTC)	 AG	924-1051	GT	AGG
(GTC)	 AG	1308-1439	GT	TGG
(TCC)	 AG	1724-1908	GT	AGG
(TTC)	 AG	2138-2254	GT	GGG
-recovered snap_scaffold_1512-snap.2-T1, internal, 160, 300
-recovered snap_scaffold_1512-snap.2-T1, internal, 432, 760
-recovered snap_scaffold_1512-snap.2-T1, internal, 924, 1051
-recovered snap_scaffold_1512-snap.2-T1, internal, 1308, 1439
-recovered snap_scaffold_1512-snap.2-T1, internal, 1724, 1908
-recovered snap_scaffold_1512-snap.2-T1, internal, 2138, 2254
Couldn't classify 160, 300
Couldn't classify 2138, 2293
Sorry, prediction Augustus_model.g40528.t1 fails validation.
(GAT)	 AG	160-300	GT	AGG
(TGC)	 AG	432-760	GT	AGG
(TTC)	 AG	924-1051	GT	AGG
(GTC)	 AG	1308-1439	GT	TGG
(TCC)	 AG	1724-1908	GT	AGG
(TTC)	 AG	2138-2293		TG
-recovered Augustus_model.g40528.t1, internal, 160, 300
-recovered Augustus_model.g40528.t1, internal, 432, 760
-recovered Augustus_model.g40528.t1, internal, 924, 1051
-recovered Augustus_model.g40528.t1, internal, 1308, 1439
-recovered Augustus_model.g40528.t1, internal, 1724, 1908

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2078, rend_intergenic: 40  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 2293
-exon list size: 15


building trellis

5.9    
11.8    
17.6    
23.5    
29.4    
35.3    
41.2    
47.1    
52.9    
58.8    
64.7    
70.6    
76.5    
82.4    
88.2    
94.1    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2078, rend_intergenic: 40  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support