-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1511

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 341, 386
Sorry, prediction GlimmerHMM_glimmerT_61183-T1 fails validation.
(GTG)	 AG	341-386	GT	AGG
(AGG)	 AG	678-772	GA	AGG
-recovered GlimmerHMM_glimmerT_61183-T1, terminal, 678, 772
-recovered GlimmerHMM_glimmerT_61183-T1, internal, 341, 386
Couldn't classify 1821, 1925
Sorry, prediction Augustus_model.g40526.t1 fails validation.
(ATG)	 TA	1457-1468	GT	TGG
(AGG)	 AG	1821-1925	GT	AGG
-recovered Augustus_model.g40526.t1, initial, 1457, 1468
-recovered Augustus_model.g40526.t1, internal, 1821, 1925
Couldn't classify 678, 768
Couldn't classify 1823, 1925
Sorry, prediction snap_scaffold_1511-snap.1-T1 fails validation.
(AGG)	 AG	678-768	GT	AGG
(GTT)	 AG	1823-1925	GT	AGG
-recovered snap_scaffold_1511-snap.1-T1, internal, 678, 768
-recovered snap_scaffold_1511-snap.1-T1, internal, 1823, 1925
Couldn't classify 341, 386
Sorry, prediction Augustus_model.g40527.t1 fails validation.
(GTG)	 AG	341-386	GT	AGG
(AGG)	 AG	678-768	GT	AGG
(CCC)	 AG	1380-1419	TT	GAT
-recovered Augustus_model.g40527.t1, terminal, 1380, 1419
-recovered Augustus_model.g40527.t1, internal, 341, 386
-recovered Augustus_model.g40527.t1, internal, 678, 768

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2296
-exon list size: 9


building trellis

9.1    
18.2    
27.3    
36.4    
45.5    
54.5    
63.6    
72.7    
81.8    
90.9    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support