-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1508

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2167, 2302
Sorry, prediction Augustus_model.g40525.t1 fails validation.
(ATG)	 TT	991-1179	GT	GTG
(GTA)	 AG	1699-1794	GT	CAG
(CTC)	 AG	2167-2302		GA
-recovered Augustus_model.g40525.t1, initial, 991, 1179
-recovered Augustus_model.g40525.t1, internal, 1699, 1794
Valid prediction for GlimmerHMM_glimmerT_61180-T1
Couldn't classify 985, 1177
Couldn't classify 2167, 2292
Sorry, prediction snap_scaffold_1508-snap.1-T1 fails validation.
(AGT)	 AG	985-1177	GT	GTG
(GGA)	 AG	1234-1301	GT	CTG
(AGT)	 AG	1420-1794	GT	CAG
(CTC)	 AG	2167-2292	GT	GGG
-recovered snap_scaffold_1508-snap.1-T1, internal, 985, 1177
-recovered snap_scaffold_1508-snap.1-T1, internal, 1234, 1301
-recovered snap_scaffold_1508-snap.1-T1, internal, 1420, 1794
-recovered snap_scaffold_1508-snap.1-T1, internal, 2167, 2292
Couldn't classify 2167, 2302
Sorry, prediction GlimmerHMM_glimmerT_61181-T1 fails validation.
(ATG)	 GA	1756-1794	GT	CAG
(CTC)	 AG	2167-2302		GA
-recovered GlimmerHMM_glimmerT_61181-T1, initial, 1756, 1794

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2302
-exon list size: 12


building trellis

7.1    
14.3    
21.4    
28.6    
35.7    
42.9    
50.0    
57.1    
64.3    
71.4    
78.6    
85.7    
92.9    
-found 3 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support