-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_1505

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 97, 219
Couldn't classify 2170, 2262
Sorry, prediction snap_scaffold_1505-snap.1-T1 fails validation.
(GAG)	 AG	97-219	GT	AGG
(AAT)	 AG	2170-2262	GT	CTG
-recovered snap_scaffold_1505-snap.1-T1, internal, 97, 219
-recovered snap_scaffold_1505-snap.1-T1, internal, 2170, 2262
Couldn't classify 97, 219
Sorry, prediction Augustus_model.g40524.t1 fails validation.
(GAG)	 AG	97-219	GT	AGG
(AGG)	 AG	427-477	TT	GAT
-recovered Augustus_model.g40524.t1, terminal, 427, 477
-recovered Augustus_model.g40524.t1, internal, 97, 219

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61179-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 2305
-exon list size: 6


building trellis

12.5    
25.0    
37.5    
50.0    
62.5    
75.0    
87.5    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support