-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_15/scaffold_15_7570752-7773715

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g24301.t1
Valid prediction for GlimmerHMM_glimmerT_36486-T1
Valid prediction for GlimmerHMM_glimmerT_36468-T1
Valid prediction for GlimmerHMM_glimmerT_36472-T1
Valid prediction for snap_scaffold_15-snap.1637-T1
Valid prediction for GlimmerHMM_glimmerT_36467-T1
Valid prediction for GlimmerHMM_glimmerT_36488-T1
Valid prediction for snap_scaffold_15-snap.1601-T1
Couldn't classify 169500, 169802
Sorry, prediction pasa_asmbl_14306.p1 fails validation.
(ATG)	 GA	169500-169802	CT	CCC
Valid prediction for snap_scaffold_15-snap.1618-T1
Valid prediction for Augustus_model.g24300.t1
Valid prediction for snap_scaffold_15-snap.1611-T1
Valid prediction for snap_scaffold_15-snap.1606-T1
Valid prediction for Augustus_model.g24294.t1
Valid prediction for Augustus_model.g24293.t1
Valid prediction for Augustus_model.g24298.t1
Valid prediction for Augustus_model.g24295.t1
Valid prediction for snap_scaffold_15-snap.1605-T1
Valid prediction for GlimmerHMM_glimmerT_36478-T1
Valid prediction for snap_scaffold_15-snap.1630-T1
Valid prediction for GlimmerHMM_glimmerT_36492-T1
Valid prediction for GlimmerHMM_glimmerT_36480-T1
Valid prediction for GlimmerHMM_glimmerT_36476-T1
Valid prediction for snap_scaffold_15-snap.1615-T1
Valid prediction for snap_scaffold_15-snap.1614-T1
Valid prediction for GlimmerHMM_glimmerT_36487-T1
Valid prediction for snap_scaffold_15-snap.1639-T1
Valid prediction for GlimmerHMM_glimmerT_36493-T1
Valid prediction for snap_scaffold_15-snap.1620-T1
Couldn't classify 154388, 154478
Sorry, prediction pasa_asmbl_15297.p1 fails validation.
(ATG)	 GC	152420-152461	GT	AGG
(TTG)	 AG	153449-153618	GT	AGG
(GAC)	 AG	153719-153895	GT	AGG
(CTC)	 AG	154388-154478	CT	CCC
-recovered pasa_asmbl_15297.p1, initial, 152420, 152461
-recovered pasa_asmbl_15297.p1, internal, 153449, 153618
-recovered pasa_asmbl_15297.p1, internal, 153719, 153895
Valid prediction for Augustus_model.g24302.t1
Valid prediction for snap_scaffold_15-snap.1635-T1
Valid prediction for snap_scaffold_15-snap.1600-T1
Valid prediction for snap_scaffold_15-snap.1607-T1
Valid prediction for snap_scaffold_15-snap.1624-T1
Valid prediction for snap_scaffold_15-snap.1627-T1
Valid prediction for GlimmerHMM_glimmerT_36482-T1
Valid prediction for GlimmerHMM_glimmerT_36474-T1
Valid prediction for Augustus_model.g24299.t1
Valid prediction for snap_scaffold_15-snap.1622-T1
Valid prediction for GlimmerHMM_glimmerT_36494-T1
Valid prediction for GlimmerHMM_glimmerT_36475-T1
Valid prediction for GlimmerHMM_glimmerT_36491-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_15-snap.1617-T1
Valid prediction for snap_scaffold_15-snap.1628-T1
Valid prediction for GlimmerHMM_glimmerT_36489-T1
Valid prediction for snap_scaffold_15-snap.1608-T1
Valid prediction for GlimmerHMM_glimmerT_36470-T1
Valid prediction for snap_scaffold_15-snap.1616-T1
Valid prediction for snap_scaffold_15-snap.1612-T1
Valid prediction for snap_scaffold_15-snap.1610-T1
Valid prediction for GlimmerHMM_glimmerT_36495-T1
Couldn't classify 15773, 15876
Couldn't classify 17480, 17645
Sorry, prediction pasa_asmbl_14309.p1 fails validation.
(GTG)	 AC	15773-15876	GT	AGG
(GTG)	 AG	16638-16683	GT	AGG
(ACT)	 AG	17125-17273	GT	CGG
(GCT)	 AG	17480-17645	GG	CAG
-recovered pasa_asmbl_14309.p1, internal, 16638, 16683
-recovered pasa_asmbl_14309.p1, internal, 17125, 17273
Valid prediction for GlimmerHMM_glimmerT_36479-T1
Valid prediction for snap_scaffold_15-snap.1632-T1
Valid prediction for GlimmerHMM_glimmerT_36477-T1
Valid prediction for snap_scaffold_15-snap.1619-T1
Couldn't classify 8100, 8187
Couldn't classify 10742, 10759
Sorry, prediction pasa_asmbl_14864.p1 fails validation.
(CCA)	 AC	8100-8187	GT	AGG
(TGG)	 AG	8376-8504	GT	CAG
(AGC)	 AG	10166-10266	GT	AGG
(GGT)	 AG	10742-10759	GT	AGG
-recovered pasa_asmbl_14864.p1, internal, 8376, 8504
-recovered pasa_asmbl_14864.p1, internal, 10166, 10266
-recovered pasa_asmbl_14864.p1, internal, 10742, 10759
Valid prediction for GlimmerHMM_glimmerT_36481-T1
Valid prediction for GlimmerHMM_glimmerT_36471-T1
Couldn't classify 25432, 25626
Couldn't classify 29521, 29596
Sorry, prediction pasa_asmbl_14307.p1 fails validation.
(AAT)	 GC	25432-25626	GT	AGG
(GAC)	 AG	28165-28247	GT	AAG
(GTT)	 AG	29521-29596	GA	TGG
-recovered pasa_asmbl_14307.p1, internal, 28165, 28247
Valid prediction for snap_scaffold_15-snap.1613-T1
Valid prediction for snap_scaffold_15-snap.1602-T1
Valid prediction for GlimmerHMM_glimmerT_36483-T1
Valid prediction for snap_scaffold_15-snap.1623-T1
Valid prediction for snap_scaffold_15-snap.1626-T1
Valid prediction for snap_scaffold_15-snap.1640-T1
Valid prediction for snap_scaffold_15-snap.1631-T1
Valid prediction for pasa_asmbl_14305.p1
Valid prediction for GlimmerHMM_glimmerT_36469-T1
Valid prediction for HiQ_model.g24296.t1
Valid prediction for snap_scaffold_15-snap.1633-T1
Valid prediction for snap_scaffold_15-snap.1625-T1
Valid prediction for GlimmerHMM_glimmerT_36485-T1
Valid prediction for snap_scaffold_15-snap.1636-T1
Valid prediction for Augustus_model.g24297.t1
Valid prediction for snap_scaffold_15-snap.1634-T1
Valid prediction for snap_scaffold_15-snap.1609-T1
Valid prediction for Augustus_model.g24303.t1
Valid prediction for snap_scaffold_15-snap.1638-T1
Valid prediction for snap_scaffold_15-snap.1621-T1
Valid prediction for GlimmerHMM_glimmerT_36466-T1
Valid prediction for snap_scaffold_15-snap.1604-T1
Valid prediction for GlimmerHMM_glimmerT_36490-T1
Valid prediction for GlimmerHMM_glimmerT_36473-T1
Valid prediction for Augustus_model.g24305.t1
Valid prediction for Augustus_model.g24304.t1
Valid prediction for GlimmerHMM_glimmerT_36484-T1
Valid prediction for snap_scaffold_15-snap.1603-T1
Valid prediction for Augustus_model.g24292.t1
Valid prediction for snap_scaffold_15-snap.1629-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 8617, rend_intergenic: 8319  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43866, rend_intergenic: 26785  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78793, rend_intergenic: 75472  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85948, rend_intergenic: 79960  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99827, rend_intergenic: 88027  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107511, rend_intergenic: 103292  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107712, rend_intergenic: 107617  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119755, rend_intergenic: 114737  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124185, rend_intergenic: 120502  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129789, rend_intergenic: 124375  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130294, rend_intergenic: 129793  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135515, rend_intergenic: 130659  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136446, rend_intergenic: 135591  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146641, rend_intergenic: 137439  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156105, rend_intergenic: 149097  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 183670, rend_intergenic: 169625  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191980, rend_intergenic: 184253  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 196837, rend_intergenic: 192540  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 202964
-exon list size: 333


building trellis

0.3    
0.6    
0.9    
1.2    
1.5    
1.8    
2.1    
2.4    
2.7    
3.0    
3.3    
3.6    
3.9    
4.2    
4.5    
4.8    
5.1    
5.4    
5.7    
6.0    
6.3    
6.6    
6.9    
7.2    
7.5    
7.8    
8.1    
8.4    
8.7    
9.0    
9.3    
9.6    
9.9    
10.1    
10.4    
10.7    
11.0    
11.3    
11.6    
11.9    
12.2    
12.5    
12.8    
13.1    
13.4    
13.7    
14.0    
14.3    
14.6    
14.9    
15.2    
15.5    
15.8    
16.1    
16.4    
16.7    
17.0    
17.3    
17.6    
17.9    
18.2    
18.5    
18.8    
19.1    
19.4    
19.7    
20.0    
20.3    
20.6    
20.9    
21.2    
21.5    
21.8    
22.1    
22.4    
22.7    
23.0    
23.3    
23.6    
23.9    
24.2    
24.5    
24.8    
25.1    
25.4    
25.7    
26.0    
26.3    
26.6    
26.9    
27.2    
27.5    
27.8    
28.1    
28.4    
28.7    
29.0    
29.3    
29.6    
29.9    
30.1    
30.4    
30.7    
31.0    
31.3    
31.6    
31.9    
32.2    
32.5    
32.8    
33.1    
33.4    
33.7    
34.0    
34.3    
34.6    
34.9    
35.2    
35.5    
35.8    
36.1    
36.4    
36.7    
37.0    
37.3    
37.6    
37.9    
38.2    
38.5    
38.8    
39.1    
39.4    
39.7    
40.0    
40.3    
40.6    
40.9    
41.2    
41.5    
41.8    
42.1    
42.4    
42.7    
43.0    
43.3    
43.6    
43.9    
44.2    
44.5    
44.8    
45.1    
45.4    
45.7    
46.0    
46.3    
46.6    
46.9    
47.2    
47.5    
47.8    
48.1    
48.4    
48.7    
49.0    
49.3    
49.6    
49.9    
50.1    
50.4    
50.7    
51.0    
51.3    
51.6    
51.9    
52.2    
52.5    
52.8    
53.1    
53.4    
53.7    
54.0    
54.3    
54.6    
54.9    
55.2    
55.5    
55.8    
56.1    
56.4    
56.7    
57.0    
57.3    
57.6    
57.9    
58.2    
58.5    
58.8    
59.1    
59.4    
59.7    
60.0    
60.3    
60.6    
60.9    
61.2    
61.5    
61.8    
62.1    
62.4    
62.7    
63.0    
63.3    
63.6    
63.9    
64.2    
64.5    
64.8    
65.1    
65.4    
65.7    
66.0    
66.3    
66.6    
66.9    
67.2    
67.5    
67.8    
68.1    
68.4    
68.7    
69.0    
69.3    
69.6    
69.9    
70.1    
70.4    
70.7    
71.0    
71.3    
71.6    
71.9    
72.2    
72.5    
72.8    
73.1    
73.4    
73.7    
74.0    
74.3    
74.6    
74.9    
75.2    
75.5    
75.8    
76.1    
76.4    
76.7    
77.0    
77.3    
77.6    
77.9    
78.2    
78.5    
78.8    
79.1    
79.4    
79.7    
80.0    
80.3    
80.6    
80.9    
81.2    
81.5    
81.8    
82.1    
82.4    
82.7    
83.0    
83.3    
83.6    
83.9    
84.2    
84.5    
84.8    
85.1    
85.4    
85.7    
86.0    
86.3    
86.6    
86.9    
87.2    
87.5    
87.8    
88.1    
88.4    
88.7    
89.0    
89.3    
89.6    
89.9    
90.1    
90.4    
90.7    
91.0    
91.3    
91.6    
91.9    
92.2    
92.5    
92.8    
93.1    
93.4    
93.7    
94.0    
94.3    
94.6    
94.9    
95.2    
95.5    
95.8    
96.1    
96.4    
96.7    
97.0    
97.3    
97.6    
97.9    
98.2    
98.5    
98.8    
99.1    
99.4    
99.7    
-found 33 predictions from path traversal
Error with prediction: snap lend_intergenic: 8617, rend_intergenic: 8319  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43866, rend_intergenic: 26785  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78793, rend_intergenic: 75472  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85948, rend_intergenic: 79960  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 99827, rend_intergenic: 88027  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107511, rend_intergenic: 103292  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 107712, rend_intergenic: 107617  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 119755, rend_intergenic: 114737  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124185, rend_intergenic: 120502  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 129789, rend_intergenic: 124375  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130294, rend_intergenic: 129793  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135515, rend_intergenic: 130659  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 136446, rend_intergenic: 135591  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 146641, rend_intergenic: 137439  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156105, rend_intergenic: 149097  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 183670, rend_intergenic: 169625  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 191980, rend_intergenic: 184253  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 196837, rend_intergenic: 192540  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 15 predictions persist after filtering for low support