-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_15/scaffold_15_6989391-7153562

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_15-snap.1482-T1
Valid prediction for Augustus_model.g24245.t1
Couldn't classify 160562, 160744
Couldn't classify 162468, 162670
Sorry, prediction pasa_asmbl_15272.p1 fails validation.
(CAT)	 AC	160562-160744	GT	TGG
(TGC)	 AG	161514-161618	GT	AGG
(ATT)	 AG	161758-161818	GT	AGG
(AGG)	 AG	162468-162670	GA	GGG
-recovered pasa_asmbl_15272.p1, internal, 161514, 161618
-recovered pasa_asmbl_15272.p1, internal, 161758, 161818
Valid prediction for snap_scaffold_15-snap.1478-T1
Valid prediction for snap_scaffold_15-snap.1496-T1
Valid prediction for GlimmerHMM_glimmerT_36389-T1
Valid prediction for GlimmerHMM_glimmerT_36401-T1
Valid prediction for GlimmerHMM_glimmerT_36388-T1
Valid prediction for GlimmerHMM_glimmerT_36394-T1
Valid prediction for Augustus_model.g24244.t1
Valid prediction for GlimmerHMM_glimmerT_36403-T1
Valid prediction for snap_scaffold_15-snap.1498-T1
Valid prediction for CodingQuarry_transcript_18037-T1
Valid prediction for snap_scaffold_15-snap.1494-T1
Valid prediction for snap_scaffold_15-snap.1515-T1
Valid prediction for snap_scaffold_15-snap.1477-T1
Valid prediction for Augustus_model.g24246.t1
Valid prediction for snap_scaffold_15-snap.1501-T1
Valid prediction for snap_scaffold_15-snap.1491-T1
Valid prediction for snap_scaffold_15-snap.1489-T1
Valid prediction for GlimmerHMM_glimmerT_36395-T1
Valid prediction for GlimmerHMM_glimmerT_36399-T1
Valid prediction for snap_scaffold_15-snap.1510-T1
Valid prediction for GlimmerHMM_glimmerT_36409-T1
Valid prediction for Augustus_model.g24249.t1
Valid prediction for snap_scaffold_15-snap.1484-T1
Valid prediction for snap_scaffold_15-snap.1485-T1
Valid prediction for Augustus_model.g24240.t1
Valid prediction for snap_scaffold_15-snap.1503-T1
Valid prediction for snap_scaffold_15-snap.1499-T1
Valid prediction for GlimmerHMM_glimmerT_36390-T1
Valid prediction for snap_scaffold_15-snap.1480-T1
Valid prediction for snap_scaffold_15-snap.1513-T1
Valid prediction for GlimmerHMM_glimmerT_36407-T1
Valid prediction for Augustus_model.g24243.t1
Valid prediction for snap_scaffold_15-snap.1511-T1
Valid prediction for snap_scaffold_15-snap.1506-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_15-snap.1486-T1
Valid prediction for Augustus_model.g24241.t1
Valid prediction for snap_scaffold_15-snap.1507-T1
Valid prediction for GlimmerHMM_glimmerT_36385-T1
Valid prediction for Augustus_model.g24242.t1
Valid prediction for GlimmerHMM_glimmerT_36386-T1
Valid prediction for snap_scaffold_15-snap.1493-T1
Valid prediction for GlimmerHMM_glimmerT_36398-T1
Valid prediction for Augustus_model.g24238.t1
Valid prediction for snap_scaffold_15-snap.1483-T1
Valid prediction for GlimmerHMM_glimmerT_36400-T1
Valid prediction for snap_scaffold_15-snap.1500-T1
Valid prediction for snap_scaffold_15-snap.1508-T1
Valid prediction for GlimmerHMM_glimmerT_36405-T1
Valid prediction for GlimmerHMM_glimmerT_36392-T1
Valid prediction for snap_scaffold_15-snap.1514-T1
Valid prediction for GlimmerHMM_glimmerT_36396-T1
Valid prediction for Augustus_model.g24247.t1
Valid prediction for GlimmerHMM_glimmerT_36406-T1
Valid prediction for GlimmerHMM_glimmerT_36393-T1
Valid prediction for snap_scaffold_15-snap.1504-T1
Valid prediction for snap_scaffold_15-snap.1492-T1
Valid prediction for snap_scaffold_15-snap.1497-T1
Valid prediction for Augustus_model.g24248.t1
Valid prediction for snap_scaffold_15-snap.1490-T1
Valid prediction for snap_scaffold_15-snap.1487-T1
Valid prediction for snap_scaffold_15-snap.1502-T1
Valid prediction for GlimmerHMM_glimmerT_36391-T1
Valid prediction for snap_scaffold_15-snap.1479-T1
Valid prediction for snap_scaffold_15-snap.1505-T1
Valid prediction for snap_scaffold_15-snap.1488-T1
Valid prediction for GlimmerHMM_glimmerT_36402-T1
Valid prediction for snap_scaffold_15-snap.1495-T1
Valid prediction for GlimmerHMM_glimmerT_36404-T1
Valid prediction for snap_scaffold_15-snap.1512-T1
Valid prediction for GlimmerHMM_glimmerT_36387-T1
Valid prediction for GlimmerHMM_glimmerT_36397-T1
Valid prediction for GlimmerHMM_glimmerT_36408-T1
Valid prediction for Augustus_model.g24239.t1
Valid prediction for snap_scaffold_15-snap.1481-T1
Valid prediction for snap_scaffold_15-snap.1509-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 9698, rend_intergenic: 7885  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20656, rend_intergenic: 10884  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24272, rend_intergenic: 22054  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29951, rend_intergenic: 24654  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40310, rend_intergenic: 35541  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52846, rend_intergenic: 50628  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58578, rend_intergenic: 55304  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67378, rend_intergenic: 65121  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95071, rend_intergenic: 94695  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115919, rend_intergenic: 114077  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122510, rend_intergenic: 117686  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132090, rend_intergenic: 124231  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133361, rend_intergenic: 132530  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135999, rend_intergenic: 135242  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144544, rend_intergenic: 141501  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148492, rend_intergenic: 146124  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161888, rend_intergenic: 158603  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 164172
-exon list size: 267


building trellis

0.4    
0.7    
1.1    
1.5    
1.9    
2.2    
2.6    
3.0    
3.3    
3.7    
4.1    
4.5    
4.8    
5.2    
5.6    
5.9    
6.3    
6.7    
7.1    
7.4    
7.8    
8.2    
8.6    
8.9    
9.3    
9.7    
10.0    
10.4    
10.8    
11.2    
11.5    
11.9    
12.3    
12.6    
13.0    
13.4    
13.8    
14.1    
14.5    
14.9    
15.2    
15.6    
16.0    
16.4    
16.7    
17.1    
17.5    
17.8    
18.2    
18.6    
19.0    
19.3    
19.7    
20.1    
20.4    
20.8    
21.2    
21.6    
21.9    
22.3    
22.7    
23.0    
23.4    
23.8    
24.2    
24.5    
24.9    
25.3    
25.7    
26.0    
26.4    
26.8    
27.1    
27.5    
27.9    
28.3    
28.6    
29.0    
29.4    
29.7    
30.1    
30.5    
30.9    
31.2    
31.6    
32.0    
32.3    
32.7    
33.1    
33.5    
33.8    
34.2    
34.6    
34.9    
35.3    
35.7    
36.1    
36.4    
36.8    
37.2    
37.5    
37.9    
38.3    
38.7    
39.0    
39.4    
39.8    
40.1    
40.5    
40.9    
41.3    
41.6    
42.0    
42.4    
42.8    
43.1    
43.5    
43.9    
44.2    
44.6    
45.0    
45.4    
45.7    
46.1    
46.5    
46.8    
47.2    
47.6    
48.0    
48.3    
48.7    
49.1    
49.4    
49.8    
50.2    
50.6    
50.9    
51.3    
51.7    
52.0    
52.4    
52.8    
53.2    
53.5    
53.9    
54.3    
54.6    
55.0    
55.4    
55.8    
56.1    
56.5    
56.9    
57.2    
57.6    
58.0    
58.4    
58.7    
59.1    
59.5    
59.9    
60.2    
60.6    
61.0    
61.3    
61.7    
62.1    
62.5    
62.8    
63.2    
63.6    
63.9    
64.3    
64.7    
65.1    
65.4    
65.8    
66.2    
66.5    
66.9    
67.3    
67.7    
68.0    
68.4    
68.8    
69.1    
69.5    
69.9    
70.3    
70.6    
71.0    
71.4    
71.7    
72.1    
72.5    
72.9    
73.2    
73.6    
74.0    
74.3    
74.7    
75.1    
75.5    
75.8    
76.2    
76.6    
77.0    
77.3    
77.7    
78.1    
78.4    
78.8    
79.2    
79.6    
79.9    
80.3    
80.7    
81.0    
81.4    
81.8    
82.2    
82.5    
82.9    
83.3    
83.6    
84.0    
84.4    
84.8    
85.1    
85.5    
85.9    
86.2    
86.6    
87.0    
87.4    
87.7    
88.1    
88.5    
88.8    
89.2    
89.6    
90.0    
90.3    
90.7    
91.1    
91.4    
91.8    
92.2    
92.6    
92.9    
93.3    
93.7    
94.1    
94.4    
94.8    
95.2    
95.5    
95.9    
96.3    
96.7    
97.0    
97.4    
97.8    
98.1    
98.5    
98.9    
99.3    
99.6    
-found 28 predictions from path traversal
Error with prediction: snap lend_intergenic: 9698, rend_intergenic: 7885  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 20656, rend_intergenic: 10884  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 24272, rend_intergenic: 22054  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 29951, rend_intergenic: 24654  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 40310, rend_intergenic: 35541  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 52846, rend_intergenic: 50628  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 58578, rend_intergenic: 55304  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 67378, rend_intergenic: 65121  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95071, rend_intergenic: 94695  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 115919, rend_intergenic: 114077  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 122510, rend_intergenic: 117686  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 132090, rend_intergenic: 124231  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 133361, rend_intergenic: 132530  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135999, rend_intergenic: 135242  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 144544, rend_intergenic: 141501  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 148492, rend_intergenic: 146124  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161888, rend_intergenic: 158603  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 11 predictions persist after filtering for low support