-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_15/scaffold_15_6591776-6762695

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g24202.t1
Couldn't classify 151386, 151838
Sorry, prediction pasa_asmbl_15257.p1 fails validation.
(CAG)	 GA	151386-151838	AT	AGA
Valid prediction for snap_scaffold_15-snap.1423-T1
Valid prediction for GlimmerHMM_glimmerT_36350-T1
Valid prediction for CodingQuarry_transcript_18027-T1
Valid prediction for GlimmerHMM_glimmerT_36351-T1
Valid prediction for snap_scaffold_15-snap.1426-T1
Valid prediction for pasa_asmbl_15259.p1
Valid prediction for Augustus_model.g24203.t1
Valid prediction for HiQ_model.g24210.t1
Valid prediction for GlimmerHMM_glimmerT_36343-T1
Valid prediction for snap_scaffold_15-snap.1413-T1
Valid prediction for Augustus_model.g24201.t1
Valid prediction for snap_scaffold_15-snap.1421-T1
Valid prediction for snap_scaffold_15-snap.1425-T1
Valid prediction for snap_scaffold_15-snap.1407-T1
Couldn't classify 64166, 64276
Couldn't classify 64454, 64654
Sorry, prediction pasa_asmbl_15921.p1 fails validation.
(CAG)	 TC	64166-64276	GT	AAG
(GAG)	 AG	64454-64654	AG	ACA
Valid prediction for GlimmerHMM_glimmerT_36336-T1
Valid prediction for snap_scaffold_15-snap.1408-T1
Valid prediction for Augustus_model.g24208.t1
Valid prediction for Augustus_model.g24207.t1
Valid prediction for Augustus_model.g24205.t1
Valid prediction for snap_scaffold_15-snap.1424-T1
Valid prediction for GlimmerHMM_glimmerT_36340-T1
Valid prediction for Augustus_model.g24206.t1
Valid prediction for GlimmerHMM_glimmerT_36349-T1
Valid prediction for snap_scaffold_15-snap.1409-T1
Valid prediction for GlimmerHMM_glimmerT_36342-T1
Valid prediction for snap_scaffold_15-snap.1412-T1
Valid prediction for GlimmerHMM_glimmerT_36346-T1
Valid prediction for HiQ_model.g24209.t1
Valid prediction for GlimmerHMM_glimmerT_36341-T1
Valid prediction for snap_scaffold_15-snap.1417-T1
Valid prediction for GlimmerHMM_glimmerT_36347-T1
Valid prediction for snap_scaffold_15-snap.1404-T1
Valid prediction for snap_scaffold_15-snap.1420-T1
Valid prediction for pasa_asmbl_15258.p1
Valid prediction for GlimmerHMM_glimmerT_36344-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_15-snap.1418-T1
Valid prediction for snap_scaffold_15-snap.1414-T1
Valid prediction for snap_scaffold_15-snap.1410-T1
Valid prediction for GlimmerHMM_glimmerT_36345-T1
Valid prediction for snap_scaffold_15-snap.1415-T1
Valid prediction for GlimmerHMM_glimmerT_36338-T1
Valid prediction for GlimmerHMM_glimmerT_36337-T1
Valid prediction for GlimmerHMM_glimmerT_36339-T1
Valid prediction for Augustus_model.g24204.t1
Valid prediction for snap_scaffold_15-snap.1405-T1
Valid prediction for snap_scaffold_15-snap.1416-T1
Valid prediction for GlimmerHMM_glimmerT_36348-T1
Valid prediction for snap_scaffold_15-snap.1419-T1
Valid prediction for snap_scaffold_15-snap.1406-T1
Valid prediction for snap_scaffold_15-snap.1411-T1
Valid prediction for snap_scaffold_15-snap.1422-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 135962, rend_intergenic: 132801  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147725, rend_intergenic: 145107  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 170920
-exon list size: 140


building trellis

0.7    
1.4    
2.1    
2.8    
3.5    
4.2    
4.9    
5.6    
6.3    
7.0    
7.7    
8.5    
9.2    
9.9    
10.6    
11.3    
12.0    
12.7    
13.4    
14.1    
14.8    
15.5    
16.2    
16.9    
17.6    
18.3    
19.0    
19.7    
20.4    
21.1    
21.8    
22.5    
23.2    
23.9    
24.6    
25.4    
26.1    
26.8    
27.5    
28.2    
28.9    
29.6    
30.3    
31.0    
31.7    
32.4    
33.1    
33.8    
34.5    
35.2    
35.9    
36.6    
37.3    
38.0    
38.7    
39.4    
40.1    
40.8    
41.5    
42.3    
43.0    
43.7    
44.4    
45.1    
45.8    
46.5    
47.2    
47.9    
48.6    
49.3    
50.0    
50.7    
51.4    
52.1    
52.8    
53.5    
54.2    
54.9    
55.6    
56.3    
57.0    
57.7    
58.5    
59.2    
59.9    
60.6    
61.3    
62.0    
62.7    
63.4    
64.1    
64.8    
65.5    
66.2    
66.9    
67.6    
68.3    
69.0    
69.7    
70.4    
71.1    
71.8    
72.5    
73.2    
73.9    
74.6    
75.4    
76.1    
76.8    
77.5    
78.2    
78.9    
79.6    
80.3    
81.0    
81.7    
82.4    
83.1    
83.8    
84.5    
85.2    
85.9    
86.6    
87.3    
88.0    
88.7    
89.4    
90.1    
90.8    
91.5    
92.3    
93.0    
93.7    
94.4    
95.1    
95.8    
96.5    
97.2    
97.9    
98.6    
99.3    
-found 17 predictions from path traversal
Error with prediction: snap lend_intergenic: 135962, rend_intergenic: 132801  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147725, rend_intergenic: 145107  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 14 predictions persist after filtering for low support