-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_15/scaffold_15_5732030-5902894

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_15-snap.1273-T1
Valid prediction for GlimmerHMM_glimmerT_36246-T1
Valid prediction for snap_scaffold_15-snap.1270-T1
Valid prediction for Augustus_model.g24153.t1
Valid prediction for GlimmerHMM_glimmerT_36234-T1
Valid prediction for GlimmerHMM_glimmerT_36239-T1
Valid prediction for snap_scaffold_15-snap.1264-T1
Valid prediction for snap_scaffold_15-snap.1253-T1
Valid prediction for Augustus_model.g24160.t1
Valid prediction for snap_scaffold_15-snap.1257-T1
Valid prediction for snap_scaffold_15-snap.1274-T1
Couldn't classify 97110, 97146
Sorry, prediction pasa_asmbl_15226.p1 fails validation.
(GTT)	 GT	97110-97146	GT	AGG
(AGC)	 AG	97313-97448	GT	AGG
(ATT)	 AG	97553-97639	GT	AGG
(GCT)	 AG	97727-97847	GT	TGG
(GAA)	 AG	98061-98195	GT	AGG
(CCA)	 AG	98400-98511	GT	GGG
(CCA)	 AG	98733-98913	GT	TGG
(GCT)	 AG	99160-99220	GT	AGG
(CTG)	 AG	99312-99483	GT	TGG
(AGC)	 AG	99717-99841	GT	AGG
(CCC)	 AG	99997-100164	GT	AGG
(TTG)	 AG	100364-100462	GT	AGG
(TCG)	 AG	100565-100702	GT	AGG
(CAC)	 AG	100928-101104	AC	GAA
-recovered pasa_asmbl_15226.p1, terminal, 100928, 101104
-recovered pasa_asmbl_15226.p1, internal, 97313, 97448
-recovered pasa_asmbl_15226.p1, internal, 97553, 97639
-recovered pasa_asmbl_15226.p1, internal, 97727, 97847
-recovered pasa_asmbl_15226.p1, internal, 98061, 98195
-recovered pasa_asmbl_15226.p1, internal, 98400, 98511
-recovered pasa_asmbl_15226.p1, internal, 98733, 98913
-recovered pasa_asmbl_15226.p1, internal, 99160, 99220
-recovered pasa_asmbl_15226.p1, internal, 99312, 99483
-recovered pasa_asmbl_15226.p1, internal, 99717, 99841
-recovered pasa_asmbl_15226.p1, internal, 99997, 100164
-recovered pasa_asmbl_15226.p1, internal, 100364, 100462
-recovered pasa_asmbl_15226.p1, internal, 100565, 100702
Valid prediction for GlimmerHMM_glimmerT_36233-T1
Couldn't classify 113053, 113728
Sorry, prediction pasa_asmbl_15229.p1 fails validation.
(GAC)	 AG	113053-113728	GT	AGG
(GAA)	 AG	113932-114202	GT	AGG
(CTC)	 AG	114805-114952	GT	AGG
(ATT)	 AG	115207-115398	CT	AAC
-recovered pasa_asmbl_15229.p1, terminal, 115207, 115398
-recovered pasa_asmbl_15229.p1, internal, 113053, 113728
-recovered pasa_asmbl_15229.p1, internal, 113932, 114202
-recovered pasa_asmbl_15229.p1, internal, 114805, 114952
Valid prediction for Augustus_model.g24157.t1
Valid prediction for Augustus_model.g24146.t1
Valid prediction for snap_scaffold_15-snap.1251-T1
Valid prediction for snap_scaffold_15-snap.1268-T1
Valid prediction for GlimmerHMM_glimmerT_36230-T1
Valid prediction for snap_scaffold_15-snap.1260-T1
Valid prediction for snap_scaffold_15-snap.1248-T1
Valid prediction for snap_scaffold_15-snap.1271-T1
Valid prediction for snap_scaffold_15-snap.1277-T1
Valid prediction for GlimmerHMM_glimmerT_36248-T1
Valid prediction for GlimmerHMM_glimmerT_36242-T1
Valid prediction for HiQ_model.g24158.t1
Valid prediction for Augustus_model.g24155.t1
Valid prediction for snap_scaffold_15-snap.1265-T1
Valid prediction for GlimmerHMM_glimmerT_36241-T1
Valid prediction for Augustus_model.g24161.t1
Valid prediction for snap_scaffold_15-snap.1261-T1
Valid prediction for snap_scaffold_15-snap.1279-T1
Valid prediction for GlimmerHMM_glimmerT_36231-T1
Valid prediction for GlimmerHMM_glimmerT_36237-T1
Valid prediction for snap_scaffold_15-snap.1249-T1
Valid prediction for snap_scaffold_15-snap.1262-T1
Valid prediction for Augustus_model.g24151.t1
Valid prediction for snap_scaffold_15-snap.1254-T1
Valid prediction for Augustus_model.g24148.t1
Valid prediction for snap_scaffold_15-snap.1267-T1
Valid prediction for snap_scaffold_15-snap.1275-T1
Valid prediction for GlimmerHMM_glimmerT_36245-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_15-snap.1256-T1
Valid prediction for HiQ_model.g24156.t1
Valid prediction for CodingQuarry_transcript_18014-T1
Valid prediction for GlimmerHMM_glimmerT_36247-T1
Valid prediction for GlimmerHMM_glimmerT_36250-T1
Valid prediction for GlimmerHMM_glimmerT_36232-T1
Valid prediction for GlimmerHMM_glimmerT_36252-T1
Valid prediction for snap_scaffold_15-snap.1266-T1
Valid prediction for snap_scaffold_15-snap.1259-T1
Valid prediction for snap_scaffold_15-snap.1252-T1
Valid prediction for GlimmerHMM_glimmerT_36238-T1
Valid prediction for snap_scaffold_15-snap.1250-T1
Valid prediction for CodingQuarry_transcript_18018-T1
Valid prediction for snap_scaffold_15-snap.1258-T1
Valid prediction for HiQ_model.g24154.t1
Valid prediction for pasa_asmbl_14230.p1
Valid prediction for GlimmerHMM_glimmerT_36243-T1
Valid prediction for CodingQuarry_transcript_18016-T1
Valid prediction for HiQ_model.g24152.t1
Valid prediction for Augustus_model.g24147.t1
Valid prediction for GlimmerHMM_glimmerT_36236-T1
Valid prediction for snap_scaffold_15-snap.1255-T1
Valid prediction for snap_scaffold_15-snap.1263-T1
Valid prediction for GlimmerHMM_glimmerT_36244-T1
Valid prediction for snap_scaffold_15-snap.1278-T1
Valid prediction for CodingQuarry_transcript_18017-T1
Valid prediction for snap_scaffold_15-snap.1269-T1
Valid prediction for GlimmerHMM_glimmerT_36240-T1
Valid prediction for pasa_asmbl_14236.p1
Valid prediction for GlimmerHMM_glimmerT_36249-T1
Valid prediction for pasa_asmbl_14238.p1
Valid prediction for CodingQuarry_transcript_18015-T1
Valid prediction for snap_scaffold_15-snap.1276-T1
Valid prediction for GlimmerHMM_glimmerT_36235-T1
Valid prediction for pasa_asmbl_14237.p1
Valid prediction for GlimmerHMM_glimmerT_36251-T1
Valid prediction for Augustus_model.g24149.t1
Valid prediction for Augustus_model.g24150.t1
Valid prediction for snap_scaffold_15-snap.1272-T1
Valid prediction for Augustus_model.g24159.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 12570, rend_intergenic: 7189  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21991, rend_intergenic: 15555  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33887, rend_intergenic: 28737  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41281, rend_intergenic: 33901  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71642, rend_intergenic: 61159  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75789, rend_intergenic: 72055  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130804, rend_intergenic: 130089  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158753, rend_intergenic: 153195  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161129, rend_intergenic: 159540  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165222, rend_intergenic: 162137  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 167151, rend_intergenic: 165441  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 170865
-exon list size: 259


building trellis

0.4    
0.8    
1.1    
1.5    
1.9    
2.3    
2.7    
3.1    
3.4    
3.8    
4.2    
4.6    
5.0    
5.4    
5.7    
6.1    
6.5    
6.9    
7.3    
7.7    
8.0    
8.4    
8.8    
9.2    
9.6    
10.0    
10.3    
10.7    
11.1    
11.5    
11.9    
12.3    
12.6    
13.0    
13.4    
13.8    
14.2    
14.6    
14.9    
15.3    
15.7    
16.1    
16.5    
16.9    
17.2    
17.6    
18.0    
18.4    
18.8    
19.2    
19.5    
19.9    
20.3    
20.7    
21.1    
21.5    
21.8    
22.2    
22.6    
23.0    
23.4    
23.8    
24.1    
24.5    
24.9    
25.3    
25.7    
26.1    
26.4    
26.8    
27.2    
27.6    
28.0    
28.4    
28.7    
29.1    
29.5    
29.9    
30.3    
30.7    
31.0    
31.4    
31.8    
32.2    
32.6    
33.0    
33.3    
33.7    
34.1    
34.5    
34.9    
35.2    
35.6    
36.0    
36.4    
36.8    
37.2    
37.5    
37.9    
38.3    
38.7    
39.1    
39.5    
39.8    
40.2    
40.6    
41.0    
41.4    
41.8    
42.1    
42.5    
42.9    
43.3    
43.7    
44.1    
44.4    
44.8    
45.2    
45.6    
46.0    
46.4    
46.7    
47.1    
47.5    
47.9    
48.3    
48.7    
49.0    
49.4    
49.8    
50.2    
50.6    
51.0    
51.3    
51.7    
52.1    
52.5    
52.9    
53.3    
53.6    
54.0    
54.4    
54.8    
55.2    
55.6    
55.9    
56.3    
56.7    
57.1    
57.5    
57.9    
58.2    
58.6    
59.0    
59.4    
59.8    
60.2    
60.5    
60.9    
61.3    
61.7    
62.1    
62.5    
62.8    
63.2    
63.6    
64.0    
64.4    
64.8    
65.1    
65.5    
65.9    
66.3    
66.7    
67.0    
67.4    
67.8    
68.2    
68.6    
69.0    
69.3    
69.7    
70.1    
70.5    
70.9    
71.3    
71.6    
72.0    
72.4    
72.8    
73.2    
73.6    
73.9    
74.3    
74.7    
75.1    
75.5    
75.9    
76.2    
76.6    
77.0    
77.4    
77.8    
78.2    
78.5    
78.9    
79.3    
79.7    
80.1    
80.5    
80.8    
81.2    
81.6    
82.0    
82.4    
82.8    
83.1    
83.5    
83.9    
84.3    
84.7    
85.1    
85.4    
85.8    
86.2    
86.6    
87.0    
87.4    
87.7    
88.1    
88.5    
88.9    
89.3    
89.7    
90.0    
90.4    
90.8    
91.2    
91.6    
92.0    
92.3    
92.7    
93.1    
93.5    
93.9    
94.3    
94.6    
95.0    
95.4    
95.8    
96.2    
96.6    
96.9    
97.3    
97.7    
98.1    
98.5    
98.9    
99.2    
99.6    
-found 21 predictions from path traversal
Error with prediction: snap lend_intergenic: 12570, rend_intergenic: 7189  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 21991, rend_intergenic: 15555  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 33887, rend_intergenic: 28737  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 41281, rend_intergenic: 33901  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71642, rend_intergenic: 61159  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 75789, rend_intergenic: 72055  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130804, rend_intergenic: 130089  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 158753, rend_intergenic: 153195  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161129, rend_intergenic: 159540  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165222, rend_intergenic: 162137  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 167151, rend_intergenic: 165441  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 16 predictions persist after filtering for low support