-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~funannotate/test/fun/predict_misc/EVM/scaffold_15/scaffold_15_5418588-5584620

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 75062, 75220
Sorry, prediction pasa_asmbl_15208.p1 fails validation.
(ATG)	 AC	73510-73531	GT	AAG
(GTG)	 AG	73781-73880	GT	AAG
(AGT)	 AG	73973-74111	GT	GGG
(ATA)	 AG	74274-74344	GT	GTG
(TTA)	 AG	74724-74787	GT	AGG
(CCA)	 AG	74884-74952	GT	AGG
(CTG)	 AG	75062-75220	AC	ACA
-recovered pasa_asmbl_15208.p1, initial, 73510, 73531
-recovered pasa_asmbl_15208.p1, internal, 73781, 73880
-recovered pasa_asmbl_15208.p1, internal, 73973, 74111
-recovered pasa_asmbl_15208.p1, internal, 74274, 74344
-recovered pasa_asmbl_15208.p1, internal, 74724, 74787
-recovered pasa_asmbl_15208.p1, internal, 74884, 74952
Valid prediction for snap_scaffold_15-snap.1174-T1
Valid prediction for GlimmerHMM_glimmerT_36184-T1
Valid prediction for snap_scaffold_15-snap.1193-T1
Couldn't classify 147264, 147385
Couldn't classify 149299, 149356
Sorry, prediction pasa_asmbl_15211.p1 fails validation.
(AGG)	 AC	147264-147385	GT	ACG
(GTA)	 AG	148429-148622	GT	GGG
(GAG)	 AG	148906-149023	GT	CGG
(GTC)	 AG	149299-149356	AC	AGA
-recovered pasa_asmbl_15211.p1, internal, 148429, 148622
-recovered pasa_asmbl_15211.p1, internal, 148906, 149023
Valid prediction for Augustus_model.g24114.t1
Valid prediction for Augustus_model.g24112.t1
Valid prediction for GlimmerHMM_glimmerT_36204-T1
Valid prediction for GlimmerHMM_glimmerT_36188-T1
Valid prediction for Augustus_model.g24124.t1
Valid prediction for HiQ_model.g24122.t1
Valid prediction for CodingQuarry_transcript_18011-T1
Valid prediction for snap_scaffold_15-snap.1175-T1
Valid prediction for GlimmerHMM_glimmerT_36177-T1
Valid prediction for GlimmerHMM_glimmerT_36202-T1
Valid prediction for snap_scaffold_15-snap.1201-T1
Valid prediction for snap_scaffold_15-snap.1170-T1
Valid prediction for snap_scaffold_15-snap.1206-T1
Valid prediction for snap_scaffold_15-snap.1197-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_36205-T1
Valid prediction for Augustus_model.g24115.t1
Valid prediction for snap_scaffold_15-snap.1195-T1
Valid prediction for Augustus_model.g24120.t1
Valid prediction for snap_scaffold_15-snap.1184-T1
Valid prediction for Augustus_model.g24128.t1
Valid prediction for Augustus_model.g24129.t1
Valid prediction for snap_scaffold_15-snap.1188-T1
Valid prediction for snap_scaffold_15-snap.1204-T1
Valid prediction for GlimmerHMM_glimmerT_36178-T1
Valid prediction for Augustus_model.g24132.t1
Valid prediction for GlimmerHMM_glimmerT_36197-T1
Valid prediction for GlimmerHMM_glimmerT_36206-T1
Valid prediction for GlimmerHMM_glimmerT_36187-T1
Valid prediction for snap_scaffold_15-snap.1208-T1
Valid prediction for pasa_asmbl_15213.p1
Valid prediction for snap_scaffold_15-snap.1199-T1
Valid prediction for Augustus_model.g24133.t1
Valid prediction for GlimmerHMM_glimmerT_36180-T1
Valid prediction for GlimmerHMM_glimmerT_36196-T1
Valid prediction for Augustus_model.g24111.t1
Valid prediction for snap_scaffold_15-snap.1191-T1
Couldn't classify 49017, 49279
Couldn't classify 52682, 52698
Sorry, prediction pasa_asmbl_15205.p1 fails validation.
(TTC)	 AG	49017-49279	GT	AGG
(GAG)	 AG	50115-50200	GT	AGG
(GGA)	 AG	50283-50393	GT	AGG
(GTG)	 AG	51078-51231	GT	AGG
(TTA)	 AG	51416-51498	GT	AGG
(GGA)	 AG	52174-52269	GT	AGG
(AAG)	 AG	52682-52698	AC	AGA
-recovered pasa_asmbl_15205.p1, terminal, 52174, 52269
-recovered pasa_asmbl_15205.p1, internal, 49017, 49279
-recovered pasa_asmbl_15205.p1, internal, 50115, 50200
-recovered pasa_asmbl_15205.p1, internal, 50283, 50393
-recovered pasa_asmbl_15205.p1, internal, 51078, 51231
-recovered pasa_asmbl_15205.p1, internal, 51416, 51498
-recovered pasa_asmbl_15205.p1, internal, 52174, 52269
Valid prediction for GlimmerHMM_glimmerT_36195-T1
Valid prediction for snap_scaffold_15-snap.1203-T1
Valid prediction for GlimmerHMM_glimmerT_36192-T1
Couldn't classify 76506, 76567
Sorry, prediction pasa_asmbl_15209.p1 fails validation.
(ATC)	 TC	76506-76567	GT	AGG
(GTA)	 AG	78932-79093	GT	AGG
(AGG)	 AG	79539-79665	GT	TAG
(GAG)	 AG	81185-81378	GT	AGG
(GGA)	 AG	81498-81588	GT	AGG
(TGT)	 AG	81720-81785	GT	AGG
(GTG)	 AG	81915-82142	GT	AGG
(GGC)	 AG	82263-82344	GT	CGG
(GTG)	 AG	82443-82534	GA	GAG
-recovered pasa_asmbl_15209.p1, terminal, 82443, 82534
-recovered pasa_asmbl_15209.p1, internal, 78932, 79093
-recovered pasa_asmbl_15209.p1, internal, 79539, 79665
-recovered pasa_asmbl_15209.p1, internal, 81185, 81378
-recovered pasa_asmbl_15209.p1, internal, 81498, 81588
-recovered pasa_asmbl_15209.p1, internal, 81720, 81785
-recovered pasa_asmbl_15209.p1, internal, 81915, 82142
-recovered pasa_asmbl_15209.p1, internal, 82263, 82344
Valid prediction for GlimmerHMM_glimmerT_36191-T1
Valid prediction for snap_scaffold_15-snap.1187-T1
Valid prediction for GlimmerHMM_glimmerT_36203-T1
Couldn't classify 150039, 150725
Sorry, prediction pasa_asmbl_15212.p1 fails validation.
(ATG)	 AC	150039-150725	TT	GCT
Valid prediction for GlimmerHMM_glimmerT_36185-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_36176-T1
Valid prediction for snap_scaffold_15-snap.1196-T1
Valid prediction for snap_scaffold_15-snap.1198-T1
Valid prediction for snap_scaffold_15-snap.1189-T1
Valid prediction for pasa_asmbl_14209.p2
Valid prediction for GlimmerHMM_glimmerT_36183-T1
Valid prediction for CodingQuarry_transcript_18008-T1
Valid prediction for GlimmerHMM_glimmerT_36198-T1
Valid prediction for CodingQuarry_transcript_18012-T1
Valid prediction for Augustus_model.g24123.t1
Valid prediction for HiQ_model.g24119.t1
Valid prediction for GlimmerHMM_glimmerT_36190-T1
Valid prediction for snap_scaffold_15-snap.1171-T1
Valid prediction for GlimmerHMM_glimmerT_36179-T1
Valid prediction for pasa_asmbl_14215.p1
Valid prediction for GlimmerHMM_glimmerT_36182-T1
Valid prediction for Augustus_model.g24131.t1
Valid prediction for snap_scaffold_15-snap.1185-T1
Valid prediction for GlimmerHMM_glimmerT_36189-T1
Valid prediction for Augustus_model.g24121.t1
Valid prediction for CodingQuarry_transcript_18009-T1
Valid prediction for snap_scaffold_15-snap.1181-T1
Valid prediction for Augustus_model.g24127.t1
Valid prediction for Augustus_model.g24118.t1
Valid prediction for snap_scaffold_15-snap.1176-T1
Valid prediction for snap_scaffold_15-snap.1179-T1
Valid prediction for GlimmerHMM_glimmerT_36186-T1
Couldn't classify 98833, 98928
Sorry, prediction pasa_asmbl_14220.p1 fails validation.
(ATG)	 AC	97906-97952	GT	GGG
(CAG)	 AG	98201-98288	GT	AGG
(GAC)	 AG	98566-98700	GT	CGG
(ACG)	 AG	98833-98928	GG	AAG
-recovered pasa_asmbl_14220.p1, initial, 97906, 97952
-recovered pasa_asmbl_14220.p1, internal, 98201, 98288
-recovered pasa_asmbl_14220.p1, internal, 98566, 98700
Valid prediction for snap_scaffold_15-snap.1205-T1
Valid prediction for snap_scaffold_15-snap.1207-T1
Couldn't classify 101945, 102025
Couldn't classify 104415, 104498
Sorry, prediction pasa_asmbl_14218.p1 fails validation.
(ATC)	 TC	101945-102025	GT	AGG
(CGT)	 AG	102247-102393	GT	CTG
(GTG)	 AG	102701-102850	GT	AGG
(GTG)	 AG	103040-103150	GT	TGG
(GTG)	 AG	103247-103423	GT	TGG
(GAG)	 AG	103562-103719	GT	AGG
(GTG)	 AG	103812-103944	GT	AGG
(GGC)	 AG	104031-104177	GT	AGG
(CTG)	 AG	104268-104297	GT	AGG
(GAG)	 AG	104415-104498	AT	AGA
-recovered pasa_asmbl_14218.p1, internal, 102247, 102393
-recovered pasa_asmbl_14218.p1, internal, 102701, 102850
-recovered pasa_asmbl_14218.p1, internal, 103040, 103150
-recovered pasa_asmbl_14218.p1, internal, 103247, 103423
-recovered pasa_asmbl_14218.p1, internal, 103562, 103719
-recovered pasa_asmbl_14218.p1, internal, 103812, 103944
-recovered pasa_asmbl_14218.p1, internal, 104031, 104177
-recovered pasa_asmbl_14218.p1, internal, 104268, 104297
Valid prediction for Augustus_model.g24113.t1
Valid prediction for snap_scaffold_15-snap.1178-T1
Valid prediction for snap_scaffold_15-snap.1209-T1
Valid prediction for snap_scaffold_15-snap.1173-T1
Valid prediction for snap_scaffold_15-snap.1190-T1
Valid prediction for GlimmerHMM_glimmerT_36193-T1
Valid prediction for snap_scaffold_15-snap.1194-T1
Valid prediction for snap_scaffold_15-snap.1186-T1
Sorry, intron length (6) is less than minimum required (10)
Valid prediction for Augustus_model.g24130.t1
Valid prediction for HiQ_model.g24125.t1
Valid prediction for snap_scaffold_15-snap.1202-T1
Valid prediction for pasa_asmbl_14222.p1
Couldn't classify 105122, 105220
Sorry, prediction pasa_asmbl_14216.p1 fails validation.
(CCG)	 AC	105122-105220	GT	AGG
(GTG)	 AG	105307-105483	GT	AGG
(GGC)	 AG	105578-105670	GT	GGG
(GAT)	 AG	105781-105933	GT	AGG
(GAG)	 AG	106063-106140	GT	GGG
(GGC)	 AG	106637-106730	GT	CGG
(GTC)	 AG	107088-107206	GT	AGG
(AAC)	 AG	107408-107470	GT	TGG
(GTC)	 AG	107573-109019	GT	AGG
(GGA)	 AG	109171-109427	GG	GAG
-recovered pasa_asmbl_14216.p1, terminal, 109171, 109427
-recovered pasa_asmbl_14216.p1, internal, 105307, 105483
-recovered pasa_asmbl_14216.p1, internal, 105578, 105670
-recovered pasa_asmbl_14216.p1, internal, 105781, 105933
-recovered pasa_asmbl_14216.p1, internal, 106063, 106140
-recovered pasa_asmbl_14216.p1, internal, 106637, 106730
-recovered pasa_asmbl_14216.p1, internal, 107088, 107206
-recovered pasa_asmbl_14216.p1, internal, 107408, 107470
-recovered pasa_asmbl_14216.p1, internal, 107573, 109019
Valid prediction for snap_scaffold_15-snap.1180-T1
Valid prediction for GlimmerHMM_glimmerT_36201-T1
Valid prediction for Augustus_model.g24126.t1
Valid prediction for Augustus_model.g24117.t1
Valid prediction for GlimmerHMM_glimmerT_36199-T1
Valid prediction for snap_scaffold_15-snap.1177-T1
Valid prediction for GlimmerHMM_glimmerT_36200-T1
Valid prediction for GlimmerHMM_glimmerT_36194-T1
Valid prediction for GlimmerHMM_glimmerT_36181-T1
Valid prediction for snap_scaffold_15-snap.1172-T1
Couldn't classify 101152, 101326
Couldn't classify 101442, 101614
Sorry, prediction pasa_asmbl_14219.p1 fails validation.
(AGA)	 CC	101152-101326	GT	CGG
(ACC)	 AG	101442-101614	GC	CCG
-recovered pasa_asmbl_14219.p1, internal, 101442, 101614
Valid prediction for snap_scaffold_15-snap.1183-T1
Valid prediction for snap_scaffold_15-snap.1182-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for snap_scaffold_15-snap.1200-T1
Valid prediction for snap_scaffold_15-snap.1192-T1
Valid prediction for Augustus_model.g24116.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 12268, rend_intergenic: 8231  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16842, rend_intergenic: 14162  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26799, rend_intergenic: 17971  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53379, rend_intergenic: 49616  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71821, rend_intergenic: 60340  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82534, rend_intergenic: 75026  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100621, rend_intergenic: 97984  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106128, rend_intergenic: 102228  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121093, rend_intergenic: 117903  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134673, rend_intergenic: 125927  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138540, rend_intergenic: 135024  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153019, rend_intergenic: 146247  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161979, rend_intergenic: 160912  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 166033
-exon list size: 455


building trellis

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99.8    
-found 29 predictions from path traversal
Error with prediction: snap lend_intergenic: 12268, rend_intergenic: 8231  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 16842, rend_intergenic: 14162  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 26799, rend_intergenic: 17971  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53379, rend_intergenic: 49616  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71821, rend_intergenic: 60340  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 82534, rend_intergenic: 75026  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 100621, rend_intergenic: 97984  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 106128, rend_intergenic: 102228  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 121093, rend_intergenic: 117903  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 134673, rend_intergenic: 125927  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 138540, rend_intergenic: 135024  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 153019, rend_intergenic: 146247  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 161979, rend_intergenic: 160912  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 26 predictions persist after filtering for low support